Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0230.Seq
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-09
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-07
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   1e-07
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   1e-07
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-07
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   5e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   1e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   2e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.003
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.004
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.004
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.009
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    28   1.4  
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)                   28   1.4  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   4.2  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 28/37 (75%), Positives = 29/37 (78%)
 Frame = -3

Query: 113 SWIVARRTSGKVFAKGVFINQERKLEVRRRLDTALVL 3
           SWI  RRT+ K FAK VFINQERKLE RRR DT LVL
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = -3

Query: 98  RRTSGKVFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+ K FAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = -3

Query: 98  RRTSGKVFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+ K FAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = -3

Query: 98  RRTSGKVFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+ K FAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = -3

Query: 98  RRTSGKVFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+ K FAK VFINQERKLE RRR DT LVL
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -3

Query: 95  RTSGKVFAKGVFINQERKLEVRRRLDTALVL 3
           RT+ K FAK VFINQERKLE RRR DT LVL
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = -3

Query: 95 RTSGKVFAKGVFINQERKLEVRRRLDT 15
          RT+ K FAK VFINQERKLE RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/24 (83%), Positives = 20/24 (83%)
 Frame = -3

Query: 74 AKGVFINQERKLEVRRRLDTALVL 3
          AK VFINQERKLE RRR DT LVL
Sbjct: 17 AKNVFINQERKLEDRRRSDTVLVL 40



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 120 VKFLDRRKTNIRESICERCFHQSRTKV 40
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = -3

Query: 65 VFINQERKLEVRRRLDTALVL 3
          VFINQERKLE RRR DT LVL
Sbjct: 20 VFINQERKLEDRRRSDTVLVL 40



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 120 VKFLDRRKTNIRESICERCFHQSRTKV 40
           VKFLD RKTN  ESIC+  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -2

Query: 120 VKFLDRRKTNIRESICERCFHQSRTKV 40
           VKFLD RKTN  ESIC+ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -3

Query: 62 FINQERKLEVRRRLDTALVL 3
          FINQERKLE RRR DT LVL
Sbjct: 21 FINQERKLEDRRRSDTVLVL 40


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -2

Query: 120 VKFLDRRKTNIRESICERCFHQSRTKV 40
           VKFLD RKTN  ESIC+ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -3

Query: 62 FINQERKLEVRRRLDTALVL 3
          FINQERKLE RRR DT LVL
Sbjct: 21 FINQERKLEDRRRSDTVLVL 40


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -3

Query: 62 FINQERKLEVRRRLDTALVL 3
          FINQERKLE RRR DT LVL
Sbjct: 21 FINQERKLEDRRRSDTVLVL 40



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 117 KFLDRRKTNIRESICERCFHQSRTKV 40
           + L  RKTN  ESIC+ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 182 KTNKI*PRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHL 301
           K + +    Y+ +    +S   F RFEH+N  ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 SYSIIPCTKYSSSIFSRFEH 265
           +Y  IPCT Y+ +++SRF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146


>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
          Length = 605

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 SYSIIPCTKYSSSIFSRFEH 265
           +Y  IPCT Y+ +++SRF H
Sbjct: 58  TYRGIPCTNYTENLWSRFWH 77


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 90  CSSCDDPRISPLTSQYQFXPLS 155
           CS CD+P I    S YQ  P S
Sbjct: 344 CSECDEPHIYAAPSNYQEPPSS 365


>SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 526

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  MFVLRRSKNFTSNVAIPIXPLIPINHYLVVLKTNKI 196
           +F++R S+N+  +  + +     + HY V+ K N +
Sbjct: 224 LFLVRESRNYVGDYTLSVCCNGKVEHYRVIFKDNML 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,945,801
Number of Sequences: 59808
Number of extensions: 149040
Number of successful extensions: 322
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)