Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0230.Seq
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.1  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 129 TLEVKFLDRRKTNIRESICERCFHQSRTK--VRGSKAIRYRPSS 4
           +L+  F D+ + +    +CE C  + RTK  +   K++++R SS
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 105  RRKTNIRESICERCFHQ 55
            RR+ N+ E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 128 VAIPIXPLIPINH-----YLVVLKTN 190
           +A+P  P++P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 128 VAIPIXPLIPINH-----YLVVLKTN 190
           +A+P  P++P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 128 VAIPIXPLIPINH-----YLVVLKTN 190
           +A+P  P++P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
 Frame = -1

Query: 172 EVMINRDKGXNW----YCDV 125
           E   N DKG NW     CDV
Sbjct: 45  ESFTNFDKGINWRSYVVCDV 64


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 248 FSRFEHSNLF 277
           FS +EH N+F
Sbjct: 278 FSHYEHQNVF 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,213
Number of Sequences: 438
Number of extensions: 1767
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)