Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0230.Seq
         (316 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             27   3.5  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    26   4.6  
At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containi...    26   6.1  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    26   6.1  
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    25   8.1  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    25   8.1  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    25   8.1  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102 RKTNIRESICERCFHQS-RTKVRGSKAIRYRPSSN 1
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 101 RRSKNFTSNVAIPIXPLIPINHYLVVLKTNKI*PRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           RRS +  + ++ P  P+ PI+H    L   KI PR    +   +  +S  S      L K
Sbjct: 53  RRSSSSFNLLSFP-PPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 281 VKLSAHL 301
               AHL
Sbjct: 112 KAAEAHL 118


>At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminal half of protein)
          Length = 650

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -1

Query: 133 CDVRGEILGSSQDEHQGKYLRKVF 62
           CD++G +   ++D+H  ++L+++F
Sbjct: 332 CDIQGYVYLMAKDQHGCRFLQRIF 355


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 78  ICERCFHQSRTKVRGSKAIRY 16
           +C RCF  ++T+    K++RY
Sbjct: 129 VCARCFGPAKTRCSRCKSVRY 149


>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 111 LDRRKTNIRESICERCFHQSRTKVRG 34
           ++ RK  +RES+ E  FH S  ++ G
Sbjct: 574 IEDRKIGLRESLAEINFHLSEAEITG 599


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 104 RSKNFTSNVAIPIXPLIPINHYLVVLKTNKI*PRSYSI-IPCTKYSSS 244
           RSK       +P   +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 200 PRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHR 313
           P    ++ C K S    S FEH  LFK  +    + H+
Sbjct: 64  PHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,320,143
Number of Sequences: 28952
Number of extensions: 109916
Number of successful extensions: 268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)