Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0228.Seq
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.21 
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    28   1.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   4.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   6.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   7.9  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 207
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -2

Query: 376 AGGDHELAGGVEVAERVHVSPVLGRVLVGLLEAIVVVLDDRSNSSANTEYDSA 218
           A G   L GGV   +R   +   GRV      A V+VL   SN  +++ YDS+
Sbjct: 205 AYGHLMLEGGVHRVQRTPATETKGRVHTS--TASVIVLPQVSNDESSSLYDSS 255


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 134 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 6
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 124 RTKRPHSDPPSLTASNRVSRTWTPASVS 207
           R  RP  +PP L+ASN    T  P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 257 IIEDYHNGFKKTDKHPPKNW 316
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 338 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 460
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 388 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 480
           P+   VP  P P  VPV  + GQ L  PV P
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP 700


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 130 KRPHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCLTDHRGLPQ 276
           +R  S+       +  SRT TP S ST   P  +    SC T   G PQ
Sbjct: 795 QRTFSNESPRAVDSGFSRTSTPFSESTSSYPLVSGNLSSCETHLNGSPQ 843


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 302 PPKNWGDV 325
           PPKNWGDV
Sbjct: 521 PPKNWGDV 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,518
Number of Sequences: 5004
Number of extensions: 39840
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)