Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0228.Seq
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 30 1.5
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 30 1.5
11_06_0142 - 20564572-20565951 29 2.0
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 29 2.6
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 4.6
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 28 4.6
05_07_0219 - 28474661-28475146,28475979-28476644 28 4.6
04_04_0437 + 25193263-25194627 28 4.6
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 4.6
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 6.1
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 6.1
09_03_0119 - 12497422-12497889 27 8.0
07_03_0439 + 18212584-18213065,18214164-18215010 27 8.0
03_05_0908 + 28686855-28687328 27 8.0
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 27 8.0
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 27 8.0
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 136 PHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPC 237
P PP A+ R SRT TPA+ S+ P+ PC
Sbjct: 340 PAPPPPPPPAAKRTSRTSTPATTSS-SAPASGPC 372
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 88 RSTLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCLTD 258
RS G Y+ R H D P + + +R R S++PC PS + D
Sbjct: 224 RSQSKGYYNERPLDGRSHDDMPKFSKESPQARASANYGAKGRPAQSKSPCQPSYIDD 280
>11_06_0142 - 20564572-20565951
Length = 459
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 151 PSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCL 252
P L S V R+W A + RR R+P P CL
Sbjct: 31 PDLVHSGAVCRSWHSAFATFRRLGLRSPPHPPCL 64
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 465 PETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 286
P + +Y ++ G+ GY S PQ ++ R+P+ T F GC S+F
Sbjct: 198 PTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---FTNGCFSIF 254
Query: 285 LK 280
++
Sbjct: 255 VQ 256
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 388 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 480
P+ RG Q PH++ + D G G+++P P
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYP 352
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -2
Query: 400 LERAAAAHAGGDHELAGGVEVAERVHVSPVLGRVLVGLLEAIVVVLDDRSN-SSANTEYD 224
L AAAA A G+ AGG + V G + G ++ +L+ + +SA ++
Sbjct: 62 LSSAAAAAALGEAAAAGGGGSDSEAILLSVQGMMCDGCAASVKRILESQPEVTSATVDFK 121
Query: 223 SASGA*IPTPESKFSTPDWMQ 161
A + T E K + DW +
Sbjct: 122 EAKAVVLTTAEVK-AAEDWQK 141
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 136 PHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCL 252
PH PPS S+ + T T + T TP+ P S + L
Sbjct: 86 PHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLL 124
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 126 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 251
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 393 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 286
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 48 FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCI 167
F K D S + K+ TRE+ D+ K + +LDC+
Sbjct: 115 FGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDCV 154
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 202 PTPESKFSTPDWMQS 158
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
>09_03_0119 - 12497422-12497889
Length = 155
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 142 SDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPS 246
S PP+LT + R W S S P+ PCS S
Sbjct: 100 SPPPALTKGGKGIRVWGAVSTS-YGVPNAAPCSVS 133
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -3
Query: 450 SISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVST 322
++S +WD+ +G ++ P R +TN P+ + + T
Sbjct: 29 TVSTHWDAASHEARGAAAASSPTSPRAASTNPPSATSAEPLHT 71
>03_05_0908 + 28686855-28687328
Length = 157
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 5 NNGRRRNPREIGGWFQQAPG 64
++G R +PRE+ GWF A G
Sbjct: 26 SHGARPSPRELQGWFAAAAG 45
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 322 VSPVLGRV-LVGLLEAIVVVLDDRSNSSANTEYDSASGA*IPTPESKFS 179
VS +LGR VGL +A V VLD +S AN +S G+ T +K S
Sbjct: 146 VSSILGRASTVGLGKA-VEVLDTLGSSMANLNINSGFGSGTTTKGNKIS 193
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 217 TPSRTPCSPSCLTDHRGLPQWLQEDRQAP 303
+PS TP SP+ + DH + ED AP
Sbjct: 113 SPSSTPSSPTAIADHDAFIEEDGEDDSAP 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,234
Number of Sequences: 37544
Number of extensions: 323024
Number of successful extensions: 1562
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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