Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0228.Seq
         (572 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          29   0.081
AF283265-1|AAG15372.1|   67|Anopheles gambiae beta-hexosaminidas...    29   0.14 
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   2.3  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   5.3  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   5.3  
AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A...    23   7.1  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   9.3  
DQ974165-1|ABJ52805.1|  482|Anopheles gambiae serpin 5 protein.        23   9.3  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   9.3  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 0.081
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 280 AIVVVLDDRSNS-SANTEYDSASGA*IPTPESKFSTPDWMQSRRVDPNEV 134
           ++   LDD SN+   NT+Y++ +   + +P+    T   +Q +++ PN++
Sbjct: 172 SVTYTLDDLSNTVPVNTQYNALNDNYVTSPQPSQVTSRQLQQQQLQPNQL 221


>AF283265-1|AAG15372.1|   67|Anopheles gambiae beta-hexosaminidase,
           beta chain protein.
          Length = 67

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 181 RTWTPASVSTRRTPSRTPCSPSCLTDHRGLP 273
           + W+PASV+     +R     +C  +HRG+P
Sbjct: 26  KLWSPASVNNADEAARRLEEQTCRMNHRGIP 56


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 408 GYPSSERPQRTRVETTNSPAGSR 340
           G  S + PQR+  + T+SP GS+
Sbjct: 300 GSDSEDLPQRSAEDRTHSPVGSQ 322



 Score = 22.6 bits (46), Expect = 9.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 154 SLTASNRVSRTWTPASVSTRRT-PSRTPCSPSCLTD 258
           SLT+ + V+     AS ST  T PS +P SP+  TD
Sbjct: 149 SLTSGSNVAAAAAGASASTPPTIPSASP-SPTRSTD 183


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 2   RNNGRRRNPREIGGW 46
           R N RRR+PR  G W
Sbjct: 254 RRNPRRRSPRSGGRW 268


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
            protein.
          Length = 1077

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 13   STPQPSRNWRLVSASSRDPTLSRC*RSTL 99
            S   PS NWRL+  +     LS   RSTL
Sbjct: 932  SLENPSVNWRLLWRNIHRSCLSSLQRSTL 960


>AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A2
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 266 DYHNGFKKTDKHPPKNWG 319
           D HN   K  ++PPK++G
Sbjct: 448 DLHNQSVKAMRYPPKSYG 465


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 296 KHPPKNWGDVDTLGNLDPA 352
           +HPP +W  +  +G+++ A
Sbjct: 446 EHPPCDWSQLSNVGSVEGA 464


>DQ974165-1|ABJ52805.1|  482|Anopheles gambiae serpin 5 protein.
          Length = 482

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 387 PQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVFLKP 277
           PQ TR +    P G   PS+     F  GC   +  P
Sbjct: 272 PQFTRPQPF-FPDGEDQPSILVPTMFASGCFPYYSSP 307


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 433 PVQGDGGQGLRHPVQPRGRAQGHVLPL--TGMSKETQQQLIHDH 558
           P   +G +GL+ P   RG  +   LPL  TG S       + +H
Sbjct: 40  PGSNNGQEGLKGPGGARGELKQFDLPLGNTGNSGNNNNNGVGNH 83


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,871
Number of Sequences: 2352
Number of extensions: 10354
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54245403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)