Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0228.Seq
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    31   0.72 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    31   0.72 
At5g61300.1 68418.m07692 expressed protein                             30   0.95 
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.3  
At1g55620.2 68414.m06367 voltage-gated chloride channel family p...    29   1.7  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    29   2.9  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   3.8  
At1g24706.1 68414.m03104 expressed protein                             28   3.8  
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    28   5.1  
At4g36910.1 68417.m05232 CBS domain-containing protein contains ...    28   5.1  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    27   8.9  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    27   8.9  
At1g25530.1 68414.m03170 lysine and histidine specific transport...    27   8.9  
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9...    27   8.9  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +1

Query: 7   QWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNRVSRT 186
           ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+ +   R 
Sbjct: 35  RYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPSTPIRD 92

Query: 187 WT---PASVSTRRTPSRTP 234
            +   PAS S R +  R P
Sbjct: 93  LSIDLPAS-SRRLSTGRLP 110


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +1

Query: 7   QWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNRVSRT 186
           ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+ +   R 
Sbjct: 35  RYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPSTPIRD 92

Query: 187 WT---PASVSTRRTPSRTP 234
            +   PAS S R +  R P
Sbjct: 93  LSIDLPAS-SRRLSTGRLP 110


>At5g61300.1 68418.m07692 expressed protein
          Length = 557

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 139 HSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCLTDHRGL 270
           H  P +  +S R SR W  +S+ST +T    P  PS   D  G+
Sbjct: 76  HLFPNAGVSSPRRSRHWMGSSISTSKTSVWPPEDPSAKIDEAGI 119


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 272 HNGFKKTDKHPPKNWGDVDTLGNLDPA 352
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At1g55620.2 68414.m06367 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 781

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 331 RVHVSPVLGRVLVGLLEAIVVVLDD--RSNSSANTEYDSASG 212
           R+ + PV G V+VG++  ++ +LD   +SNSS     D  +G
Sbjct: 183 RILLIPVTGGVIVGMMHGLLEILDQIRQSNSSQRQGLDFLAG 224


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 151 PSLTASNRVSRTWTPASVSTRRTPSRTPCSPSCLTDHR 264
           P +T +  VSRT  PA V   ++ S  P +PS   +HR
Sbjct: 848 PDVTQNLPVSRTPFPARVPVVKSFSTVPLNPSAENNHR 885


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 302 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 454
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 492  SSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAG 346
            S  +RLD         S + D  R   KGY   +R  R RV+ ++ P G
Sbjct: 1461 SVEARLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRERVDRSDKPRG 1509


>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 91  STLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRT 219
           STL   +  A +   P+ DPP   ++    R  TP+S+ T+ T
Sbjct: 32  STLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLT 74


>At4g36910.1 68417.m05232 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 236

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 504 NVPLS-SPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSV 328
           +VPLS +P R    P +   +   + SV+   K   S   P ++R+ + +S AGS L + 
Sbjct: 7   SVPLSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTN 66

Query: 327 STSPQ 313
           S+SP+
Sbjct: 67  SSSPR 71


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 87  KKYLTREVFDSLKNKKT-SFGSTLLDCIQSGV 179
           +KY  R+VFD + ++ T S+ S +  C Q G+
Sbjct: 97  RKYAVRKVFDEMLHRDTVSYCSIINSCCQDGL 128


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 60  QGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGI 206
           +GSD  SL    ++    D+   K T+FGS+ LD ++  +   DSG+ +
Sbjct: 263 KGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPV 309


>At1g25530.1 68414.m03170 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GI:2576361 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 440

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 223 SRTPCSPSCLTDHRGLPQWLQEDRQAPAQ 309
           S +P SPS  TD +   +W  ED   PA+
Sbjct: 3   SSSPVSPSKETDRKSGEKWTAEDPSRPAK 31


>At1g10410.1 68414.m01173 expressed protein similar to ESTs
           gb|N96021 and gb|N96863
          Length = 485

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 HSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPS 246
           H D  SL  S RVS + T  + STR T S    S S
Sbjct: 88  HEDALSLNGSERVSLSSTTTTSSTRDTDSNEVMSQS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,243
Number of Sequences: 28952
Number of extensions: 226149
Number of successful extensions: 955
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)