Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0227.Seq
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    31   0.99 
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     30   1.3  
08_02_0934 + 22747742-22748644                                         29   3.0  
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228...    28   7.0  
07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229...    28   7.0  
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176           28   7.0  
08_01_0038 - 282431-283954                                             27   9.2  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    27   9.2  

>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 456  VTRSVSRYTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 346
            V   V  Y CQ P   ++FRF+   SRH R+   SS K
Sbjct: 1306 VHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 423 RPSARSFRFLPFLSRHVRRLSPSSSKSGAP 334
           R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 447 SVSRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSGA 337
           SV R    +P+  SF  LPF+ +  R   PSSS  G+
Sbjct: 2   SVERDGRDQPNIDSFSQLPFIRQAAREKPPSSSSGGS 38


>08_01_1084 -
           11120719-11120950,11121035-11121133,11122446-11122849,
           11123559-11124197
          Length = 457

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -2

Query: 516 SPKVPPDAPCSGALSAA-GVVVTRSVSRYTCQRPSARSFRF-----LPFLSRHVRRLSP 358
           +P+ PP+APCS  LS++    +  + S      P  R   F     L     HVRR+ P
Sbjct: 91  APESPPEAPCSTRLSSSLASAILAAASASPAAPPPVRDDGFDAGAELVLRPSHVRRVVP 149


>07_01_0327 +
           2289472-2289978,2290016-2290444,2290688-2290750,
           2290845-2291126
          Length = 426

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -2

Query: 471 AAGVVVTRSVSRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVPI*CF 310
           A GV+     +R  C RP   +   L FL R VRR    SS++G   R P   F
Sbjct: 102 AGGVLAAMLFARGPCGRPMYSADDALGFLLRRVRRRG-WSSRAGGLLRRPAGAF 154


>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
          Length = 427

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 492 PCSGALSAAGVVVTRSVSRYTCQRPSARSFRFLPFLSRHVR 370
           PC G  +A  VV  R+ + Y C    AR        SRH R
Sbjct: 66  PCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHER 106


>08_01_0038 - 282431-283954
          Length = 507

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   FPTVAQLQW-RMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 183
           FP++A+L   R   C + Y VK R   LL+QLI     + R + L     + D ++   S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286

Query: 184 LEQE 195
           ++QE
Sbjct: 287 IQQE 290


>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
            39490623-39491432,39491738-39493035
          Length = 1205

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 435  YTCQRPS-ARSFRFLPFLSRHVRRLSPSSSK 346
            Y C  P  A++FRF+   SRH R+   S  K
Sbjct: 1169 YVCHEPGCAQTFRFVSDFSRHKRKTGHSVKK 1199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,505
Number of Sequences: 37544
Number of extensions: 313181
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)