Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0226.Seq
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    92   6e-20
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   1.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    22   3.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   4.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   5.5  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.2  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 91.9 bits (218), Expect = 6e-20
 Identities = 44/87 (50%), Positives = 57/87 (65%)
 Frame = +3

Query: 249 PALSVIEVLNIYSHDSDNDVAYNSIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
           P + + + L+ YSHD+D DVAYN+IFAMGLVGAGT+N            Y+ K    LFM
Sbjct: 683 PQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFM 742

Query: 429 VLLAQGLCHAGKGTVTLCPAHANRRLL 509
           V +AQGL + GKGT+TL P H  R++L
Sbjct: 743 VRIAQGLLYLGKGTMTLNPYHTERQIL 769



 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 28/56 (50%), Positives = 38/56 (67%)
 Frame = +1

Query: 85  SSVQAVATLGVAVIALAAETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
           +++Q  A LGVA IA+  + GAEM  R F  +  YGEP +R+A+PLA+ L S SNP
Sbjct: 628 TTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNP 683


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 215 TARRTTGSPYLPSCPKMRVHISAPVSAANAMTATP 111
           T +RTT SP +PS    R H  +P S ++ +   P
Sbjct: 161 TEQRTTSSPTIPSYAN-RTHTDSPTSLSHRLPNVP 194


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 22.2 bits (45), Expect(2) = 3.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 200 TGSPYLPSCPKMRVHISAPVSAANAMTAT 114
           T   YL + PK R+ IS  +S++++ TAT
Sbjct: 433 TPDSYL-AAPKERLSISDNMSSSSSQTAT 460



 Score = 21.8 bits (44), Expect(2) = 3.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 299 IRIVGVYIEHFDDG 258
           +R++ +Y   FDDG
Sbjct: 380 LRLIAIYAPRFDDG 393


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 245 DTEHRAMASGTARRTTGSPYLPS 177
           +T ++A+ S ++ R+ G PY PS
Sbjct: 97  NTSYQAIPSSSSNRSRGGPYTPS 119


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 473  HRALAGVTQPLRQQHHEQVHRRLA 402
            H  L  VT  L Q+H E+ H R A
Sbjct: 1981 HVQLRNVTSKLSQKHFEESHERFA 2004


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 249 VGHRAQGDGERHGAPHYRLPVPTKLSEDAGAHFGAR 142
           +G   + DG  HG+  Y       +S+DA  H G R
Sbjct: 210 IGDGDEADGINHGSYFYFASQEGIMSKDANIHAGIR 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,199
Number of Sequences: 5004
Number of extensions: 29104
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)