Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0226.Seq
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 81 4e-16
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 79 2e-15
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 79 2e-15
11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402 29 2.4
11_06_0414 - 23247896-23248654,23249400-23249879,23251924-232520... 29 3.2
11_01_0794 + 6989069-6989300,6989893-6989966,6990303-6990372,699... 29 3.2
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 29 3.2
01_07_0355 - 42973861-42974303,42974821-42974925,42975338-429754... 29 3.2
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 28 5.5
01_01_0529 + 3874865-3876285,3876352-3876367 28 5.5
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 27 7.3
08_02_1623 - 28314402-28315094 27 7.3
08_01_0833 + 8113327-8113449,8113797-8114020,8115361-8115437,811... 27 7.3
07_03_1351 + 25959418-25959909 27 7.3
12_02_0543 + 20178096-20178500 27 9.7
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 27 9.7
05_02_0124 + 6849034-6851502 27 9.7
03_01_0615 + 4523202-4524518 27 9.7
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/88 (43%), Positives = 55/88 (62%)
Frame = +3
Query: 249 PALSVIEVLNIYSHDSDNDVAYNSIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P ++V++ L+ SHD+D DV+ +I ++G +GAGTNN Y+ K HLF
Sbjct: 691 PKVNVMDTLSRLSHDADADVSMAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFC 750
Query: 429 VLLAQGLCHAGKGTVTLCPAHANRRLLT 512
V +AQGL H GKG +TL P H++R LL+
Sbjct: 751 VRIAQGLVHLGKGLLTLSPYHSDRFLLS 778
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 94 QAVATLGVAVIALAAETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
Q A LG+A+IA+A E GAEM R +L +YGE +RRAVPLA+ + +SNP
Sbjct: 639 QGPAVLGIALIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNP 691
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +3
Query: 249 PALSVIEVLNIYSHDSDNDVAYNSIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P ++V++ ++ SHD+D +V+ +I ++GL+GAGTNN Y+ K HLF
Sbjct: 731 PKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFC 790
Query: 429 VLLAQGLCHAGKGTVTLCPAHANRRLLT 512
V +AQGL H GKG +TL P H++R LL+
Sbjct: 791 VRIAQGLVHLGKGLLTLSPYHSDRFLLS 818
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 94 QAVATLGVAVIALAAETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
Q A LG+++I++A E GAEM R +L +YGE +RRAVPLA+ L +SNP
Sbjct: 679 QGPAVLGISLISMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNP 731
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +3
Query: 249 PALSVIEVLNIYSHDSDNDVAYNSIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P ++V++ ++ SHD+D +V+ +I ++GL+GAGTNN Y+ K HLF
Sbjct: 694 PKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFC 753
Query: 429 VLLAQGLCHAGKGTVTLCPAHANRRLLT 512
V +AQGL H GKG +TL P H++R LL+
Sbjct: 754 VRIAQGLVHLGKGLLTLSPYHSDRFLLS 781
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 94 QAVATLGVAVIALAAETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
Q A LG+++IA+A E GAEM R +L +YGE +RRAVPLA+ L +SNP
Sbjct: 642 QGPAVLGISLIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNP 694
>11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402
Length = 154
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 245 DTEHRAMASGTARRTTGSPYLPSCPKMRVHISAPVSAANAMTATP 111
D E +A A A P LPS P+ R+ ++ S + A+P
Sbjct: 34 DEEEKAPAGSGAAIAAARPLLPSSPRSRIEMAMVNSPSGVTAASP 78
>11_06_0414 -
23247896-23248654,23249400-23249879,23251924-23252091,
23252223-23252231
Length = 471
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 225 GERHGAPHYRLPVPTKLSEDAGAHFGARFSCQCDDRDAKGRHSLHRGQHL 76
GE H PH L TKL H R QC++ + + R +G+ L
Sbjct: 85 GEEHERPHEELGQGTKLETQCEEH--KRLERQCEELERQRRKLERQGEEL 132
>11_01_0794 +
6989069-6989300,6989893-6989966,6990303-6990372,
6991099-6991280
Length = 185
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 358 LLVPAPTRPMANMEL*ATSLSESWEYILSTSMTESAGWTPS 236
L+V A N E+ + +++E W +L+ +++ GW PS
Sbjct: 61 LIVRAFQNDAINAEIVSVTVTEVWIAVLAYTLSRHLGWAPS 101
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 511 VSRRRFACAGHRVTVPLPA*HSPCASSTMNRCTGDLPW 398
VSR A H V P P H P A STM + P+
Sbjct: 332 VSRDALFAAHHHVVAPPPFFHHPYAGSTMATLSASAPF 369
>01_07_0355 -
42973861-42974303,42974821-42974925,42975338-42975461,
42975601-42975743,42975896-42976031,42976112-42976434,
42976942-42976999
Length = 443
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 165 AGAHFGARFSCQCDDRDAKGRHSLHR 88
AGAH A + QC DAK R ++H+
Sbjct: 362 AGAHKAAALALQCLSADAKNRPTMHQ 387
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/82 (28%), Positives = 30/82 (36%)
Frame = -3
Query: 359 VVSAGAHEAHGEYGIVSDVVIRIVGVYIEHFDDGECGLDTEHRAMASGTARRTTGSPYLP 180
+V A A GE + + + V Y+E D H ASG +P+LP
Sbjct: 185 LVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIRAKNAASHNK-ASGNGHAKPRAPHLP 243
Query: 179 SCPKMRVHISAPVSAANAMTAT 114
R AP AA T T
Sbjct: 244 PPVSQRRQFQAPPPAAPTTTKT 265
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -2
Query: 258 RVRVGHRAQGDGERHGAPHYRLPVPTKLSEDAGAHFGARFSCQCDDRDAKG 106
R+ R +G + A H R P PTK +E G H + S D G
Sbjct: 16 RIPSHRRRKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSLDGAG 66
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 236 HRAMASGTARRTTGSPYLPSCPKMRVHISAPVSAANAMTATPRVAT 99
H A SG + GSP + P M+ SA AA+A +TP T
Sbjct: 7 HSASTSGGGGGSEGSPTGRAAPGMQGGGSAATPAASASASTPASET 52
>08_02_1623 - 28314402-28315094
Length = 230
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 248 LDTEHRAMASGTARRTTGSPYLPSCPKMRVHISAPVSAANAMTATPRVATACT 90
L T + A+ + A + C ++ + ++A + A ATP VAT C+
Sbjct: 81 LGTFNTALDAARAYDSAARALYGDCARLNLLLAAATAGAPPAAATPSVATPCS 133
>08_01_0833 +
8113327-8113449,8113797-8114020,8115361-8115437,
8115516-8115600,8115695-8115812,8116516-8116887
Length = 332
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 448 SPCASSTMNRCTGDLP-WYSASARSIVASLAL 356
SPC ST N+ LP W S+R +VASL L
Sbjct: 161 SPCPVSTSNK-ENTLPNWVPQSSRHLVASLRL 191
>07_03_1351 + 25959418-25959909
Length = 163
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 455 RRQGHGDPVSRAREPAPANQPALAGLLVVL 544
RR GH + A E AP+ +P+ AG L
Sbjct: 7 RRHGHAAAAAEAEEEAPSPRPSSAGCYTFL 36
>12_02_0543 + 20178096-20178500
Length = 134
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 543 STTSRPASAGWLAGAGSRARDTG 475
+T + AS GW GAGS +TG
Sbjct: 65 ATATTLASGGWRLGAGSAGEETG 87
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 439 ASSTMNRCTGDLPWYSAS 386
A ST+ +C GDLP+Y+ S
Sbjct: 472 AISTIKQCLGDLPFYTVS 489
>05_02_0124 + 6849034-6851502
Length = 822
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 79 VLSSVQAVA-TLGVAVIALAAETGA-EMCTRIFGQL 180
V+ S QA A T+G A++++ AE+G E R+F QL
Sbjct: 385 VIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQL 420
>03_01_0615 + 4523202-4524518
Length = 438
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 331 WASWAPALTTQDXXXXXXXXXXTTASLRCTCSWCCWRRGCVTPA 462
WA +P T + ASL C+ SWC +G PA
Sbjct: 104 WAHCSPCGTCPSSSLFAPANSSSYASLPCSSSWCPLFQGQACPA 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,620
Number of Sequences: 37544
Number of extensions: 265806
Number of successful extensions: 975
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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