Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0226.Seq
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56323| Best HMM Match : CDtoxinA (HMM E-Value=2.3)                  50   2e-06
SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)                33   0.20 
SB_38834| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        27   9.9  

>SB_56323| Best HMM Match : CDtoxinA (HMM E-Value=2.3)
          Length = 290

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/53 (47%), Positives = 31/53 (58%)
 Frame = +3

Query: 351 TNNXXXXXXXXXXXXYHGKSPVHLFMVLLAQGLCHAGKGTVTLCPAHANRRLL 509
           TNN            Y+ K   +LFMV LAQGL H GKGT+T+ P H++R LL
Sbjct: 2   TNNARLAGMLRQLAMYYHKDANNLFMVRLAQGLVHMGKGTLTVGPYHSDRSLL 54


>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 88  SVQAVATLGVAVIALAAETGAEMCTRIFGQL 180
           S Q +A LG+A+IA+  E GA+M  R F  L
Sbjct: 608 SHQGIAVLGIALIAMGEEIGAQMGLRAFNHL 638


>SB_38834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 88  SVQAVATLGVAVIALAAETGAEMCTRIFGQL 180
           S Q +A LG+A+IA+  E GA+M  R F  L
Sbjct: 46  SHQGIAVLGIALIAMGEEIGAQMGLRAFNHL 76


>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +2

Query: 371 DDAACAGAVPRQVSGAPVHXXXXXXXVSRRQGHGDPVSRAREPAPANQPALAG 529
           +DA+C   +P+Q      H          R   G PVS   EP P +  +  G
Sbjct: 29  NDASCLAKMPKQQIARICHSSASKEGTGSRTITGYPVSTPSEPTPDSASSTVG 81


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 489 HANRRLLTSPRSPACSSC 542
           +  R LLT  RSP+C+SC
Sbjct: 869 YLKRHLLTHTRSPSCASC 886


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,575,514
Number of Sequences: 59808
Number of extensions: 273011
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)