Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0226.Seq
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 100 1e-21
Z83127-5|CAB05628.2| 575|Caenorhabditis elegans Hypothetical pr... 30 1.2
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 3.8
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 27 8.7
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 27 8.7
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 27 8.7
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +3
Query: 249 PALSVIEVLNIYSHDSDNDVAYNSIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P L+++E L+ +SHDSD D A+N+IFAMGLVGAGTNN YH K V L +
Sbjct: 761 PQLNILETLSKFSHDSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLASYHYKDQVSLML 820
Query: 429 VLLAQGLCHAGKGTVTLCPAHANRRLLT 512
V +AQGL H GKGT+TL P H++R+LL+
Sbjct: 821 VRIAQGLTHLGKGTMTLNPWHSDRQLLS 848
Score = 77.4 bits (182), Expect = 6e-15
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +1
Query: 82 LSSVQAVATLGVAVIALAAETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
LSS QAVA LG+ +IA+ + G++M R+FG L RYGEPV+RRAVPLA++L SVSNP
Sbjct: 705 LSSQQAVAVLGIGLIAMGDDIGSQMALRMFGHLIRYGEPVIRRAVPLALSLLSVSNP 761
>Z83127-5|CAB05628.2| 575|Caenorhabditis elegans Hypothetical
protein T23F6.5 protein.
Length = 575
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 263 DGECGLDTEHRAMASGTARRTTGSPYLPSCPKMRVHISAPVSAANAM 123
DGEC H + S TAR G P L C + + A S+A +
Sbjct: 291 DGECEHKPHHSVVHSSTARMCVGRPGLAYCRQKCRALDASESSARCL 337
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 537 TSRPASAGWLAGAGSRARDT 478
T RP +AGW GA RDT
Sbjct: 227 THRPTTAGWTNGANGTTRDT 246
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 537 TSRPASAGWLAGAGSRARDT 478
T RP +AGW GA RDT
Sbjct: 251 TQRPTTAGWRNGANGTTRDT 270
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 537 TSRPASAGWLAGAGSRARDT 478
T RP +AGW GA RDT
Sbjct: 569 THRPTTAGWTNGANGTTRDT 588
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 537 TSRPASAGWLAGAGSRARDT 478
T RP +AGW GA RDT
Sbjct: 767 THRPTTAGWTNGANGTTRDT 786
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 537 TSRPASAGWLAGAGSRARDT 478
T RP +AGW GA RDT
Sbjct: 869 THRPTTAGWTNGANGTTRDT 888
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 537 TSRPASAGWLAGAGSRARDT 478
T RP +AGW GA RDT
Sbjct: 395 THRPTTAGWRNGANGTTRDT 414
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical
protein K07G5.1 protein.
Length = 998
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 82 LSSVQAVATLGVAVIALAAETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVS 246
LS + A L V + LAA T + ++G +G ++ +A+ + ++L SVS
Sbjct: 558 LSDCRLGAYLSVLINTLAATTTLKSLDISGNEMGNFGARILSKALQVNVSLRSVS 612
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 261 RRVRVGHRAQGDGERHGAPHYRLPVPT 181
RRV G RA+ +RH A Y+ P PT
Sbjct: 24 RRVVDGVRAKSSRQRHQAVLYQAPTPT 50
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 261 RRVRVGHRAQGDGERHGAPHYRLPVPT 181
RRV G RA+ +RH A Y+ P PT
Sbjct: 24 RRVVDGVRAKSSRQRHQAVLYQAPTPT 50
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 261 RRVRVGHRAQGDGERHGAPHYRLPVPT 181
RRV G RA+ +RH A Y+ P PT
Sbjct: 24 RRVVDGVRAKSSRQRHQAVLYQAPTPT 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,156,116
Number of Sequences: 27780
Number of extensions: 186295
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -