Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0226.Seq
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 448 SPCASSTMNRCTGDL 404
           +PC  +T N CT +L
Sbjct: 433 NPCTHTTTNGCTAEL 447


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 448 SPCASSTMNRCTGDL 404
           +PC  +T N CT +L
Sbjct: 419 NPCTHTTTNGCTAEL 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 448 SPCASSTMNRCTGDL 404
           +PC  +T N CT +L
Sbjct: 453 NPCTHTTTNGCTAEL 467


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 448 SPCASSTMNRCTGDL 404
           +PC  +T N CT +L
Sbjct: 402 NPCTHTTTNGCTAEL 416


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 320 GIVSDVVIRIVGVYIEHFDDGE 255
           G   D+ +   G  I H++DGE
Sbjct: 324 GYCIDMEVPYSGTLISHYEDGE 345


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 261 RRVRVGHRAQGDGERHGAPHYRLPVP 184
           RR   G  + GD E H A   + P P
Sbjct: 540 RRANSGSTSSGDDELHRASLSKTPQP 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,963
Number of Sequences: 438
Number of extensions: 1981
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)