Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0224.Seq
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 31 0.15
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 31 0.26
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.4
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 28 1.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.8
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 2.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.2
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 4.2
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 26 7.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 9.7
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 606 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 719
S DYHL++ L E YK QR GK LK+++
Sbjct: 31 SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 30.7 bits (66), Expect = 0.26
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 522 SGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRD-LAGKA 698
S S L+ + +E + + V++ CE F + YL E KG+ D L +
Sbjct: 165 SKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCEN 224
Query: 699 STLKKMMDK 725
+ LK+ +DK
Sbjct: 225 TALKEKIDK 233
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 540 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 686
E +L V N I ++KTC +S ND ++ DY+S + + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.4
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +3
Query: 477 NQPHHVQGPRHTSWESGASALEHALKLESDVTN-SIREVIKTCESSFNDYHLVD----YL 641
+QP H + H S + + K+ ++V S+ E +KT E + DYH Y+
Sbjct: 13 SQPGHTEIVDHVSEKVITNGKNVNKKVNAEVDGKSMVEKVKTHEENAEDYHYGGYHPVYI 72
Query: 642 SGEFLDEQYKGQRDLA-GKASTLKKMMDKHA 731
EF +Y +R L G ST+ D+ A
Sbjct: 73 GEEFHHRRYVVERKLGWGHFSTVWLAYDRAA 103
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 531 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 668
S L+ K +S+ N IR +I E++ H +S FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 385 KLFFDAATEEREHATKLIDYLLMRGKLTGSVTNLITYRAPATRRGRAAHQPSSTPSS 555
K +D E A +LID LL R + N + ++ + + +H STPS+
Sbjct: 58 KTNYDKRFERGSEADELIDQLLSRVSMLEKRLNEVGTKSQSDYENQQSHNLPSTPSA 114
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 321 NPVLSHG-GLLLDRYGEPPRLREAILRC 401
+P L +G G+L DRYG EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 552 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 665
++E DV S++ + DYH LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 477 NQPHHVQGPRHTSWESGASAL 539
NQP PRH S+E S L
Sbjct: 181 NQPRSADSPRHASFEKACSEL 201
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 602 REQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQ 709
R +Q + PG L P+RT P P+R G+ PQ
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQ 550
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 575 QHPGGHQDLREQ---LQRLPPGRLLVRG--IPRRTVQGPARPRRQGLDPQ 709
Q PG Q + Q +Q + P R ++ P+RT P P+R G+ PQ
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 208 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 101
G S N S+ + +N PHL+ ++ F+D I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,802
Number of Sequences: 5004
Number of extensions: 53158
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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