Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0224.Seq
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 4e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 5e-07
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 32 0.63
02_02_0246 - 8243584-8243696,8243848-8244415,8244500-8244685,824... 32 0.63
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 31 1.1
12_02_0911 + 24236374-24237582 31 1.4
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.4
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 30 1.9
05_05_0221 - 23385626-23386702 29 3.3
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.3
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.3
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 29 4.4
07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400... 29 5.8
11_06_0707 + 26467214-26470309 28 7.7
11_06_0698 + 26385989-26389090 28 7.7
03_02_0158 - 6020682-6020796,6021112-6021329,6021548-6021589,602... 28 7.7
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +1
Query: 274 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 453
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 454 RG---KLTGSVTNLITYRAP 504
RG +L VT L + P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170
Score = 34.7 bits (76), Expect = 0.089
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 534 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 713
A+E AL LE V + + + S ND L D++ EFL+EQ + + ++ + L++
Sbjct: 178 AMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236
Query: 714 MMDKHAALGDFIFRQEIL 767
+ H G + F Q++L
Sbjct: 237 VGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.0 bits (119), Expect = 5e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 307 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 477
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 478 TNLITYRAP 504
T L + P
Sbjct: 194 TPLTEFDHP 202
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 606 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGDFIFRQEIL 767
S ND L D++ EFL+EQ + + ++ + L+++ H G + F Q++L
Sbjct: 227 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 576 SIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM-DKHAALGDFIF 752
S++++ K C ++D + + +S E L+E TLK +M +K A+ G F+
Sbjct: 1356 SVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTFLL 1415
Query: 753 RQEI 764
+EI
Sbjct: 1416 NEEI 1419
>02_02_0246 -
8243584-8243696,8243848-8244415,8244500-8244685,
8244772-8244804,8244901-8244999,8245091-8245330,
8246130-8246447,8246589-8246646,8246788-8246846,
8246888-8246960,8247004-8247219,8247326-8247495
Length = 710
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 346 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTNLITYRAPATRRGRA 525
Y+SI T+ G+ L + TE ++ L + L G++TNL+ + TR+ R
Sbjct: 241 YWSITTLTTTGYGDLHAENPTEMLFDIVYMMFNLGLTAYLIGNMTNLVVHGTSRTRKFRD 300
Query: 526 AHQPSS 543
+ Q +S
Sbjct: 301 SIQAAS 306
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +2
Query: 509 HVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPPGRLLVRGIPRRTVQGPARPR 688
H ++ +S RPQ+ + + Q Q + +Q P + L +G RR Q P R
Sbjct: 338 HSASKQLLSQNGRPQSSQSQRMQSTSHGQRPHQPVQSQWPLQSL-QG--RRPQQSPQNTR 394
Query: 689 RQGLDPQEDDGQARRPRRFHLSTRNPRIE 775
Q + + Q+ + +R LS++N R+E
Sbjct: 395 PQLMSKSQRPQQSLQRQRPQLSSQNERLE 423
>12_02_0911 + 24236374-24237582
Length = 402
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 519 ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 686
++GA+A + A L+L+ S +EV +H+ D+LS +EQY G L
Sbjct: 169 DAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSL 226
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 543 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 713
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 623 PPGRLLVRGIPRRTVQGPARPRRQG-LDPQEDDGQARRPRRFHLS 754
PPG VR P++ Q P PRR+ P R P R HLS
Sbjct: 118 PPGFAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHLS 162
>05_05_0221 - 23385626-23386702
Length = 358
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 225 TSAPSPSGMSAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPPRLREAILRCC 404
T+AP S ++ ++L+ E S V L HG L +G L ILRCC
Sbjct: 13 TAAPVASPAASSMASELMAQGRE-----SAAVLEALLHGASLPPAHGGAHALAAEILRCC 67
Query: 405 D 407
D
Sbjct: 68 D 68
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 525 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 632
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = +1
Query: 334 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTNLITYRAPATR 513
A+ YF + TV P A FF + +RE T L+D LL S +L YR R
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL-------SDQHLKNYRMRKVR 165
Query: 514 RGRAAHQPSSTPSSWR 561
+ + P + WR
Sbjct: 166 EIQESRTPGGS-QKWR 180
>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
Length = 165
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 228 SAPSPSG-MSAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGE 368
SAP PSG + HGA DP R + HGG + +G+
Sbjct: 51 SAPPPSGHRTPPHGAGSSTPQRNKDPASRPRSQSAVGHGGGSVPAWGQ 98
>07_01_0542 +
4002542-4003119,4004347-4004404,4004518-4004835,
4005201-4005446,4005550-4005648,4005912-4006097,
4006204-4006401,4006521-4006596,4006721-4007637
Length = 891
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = +1
Query: 325 QYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTNLITYRAP 504
+Y+A Y+SI T++ G+ + + E T ++ L + + G++TNL+ +
Sbjct: 255 RYVA-SMYWSITTLSTVGYGDMHAENTGEMVFTTTYMLFNLGLTAYIIGNMTNLVVHGTS 313
Query: 505 ATRRGRAAHQPSST 546
TR+ R Q +++
Sbjct: 314 RTRKFRDMIQAATS 327
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 510 CGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 337
CGG P+ V A LA EQ NE R+L + S+ + RE + EV PH
Sbjct: 363 CGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 510 CGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 337
CGG P+ V A LA EQ NE R+L + S+ + RE + EV PH
Sbjct: 363 CGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418
>03_02_0158 -
6020682-6020796,6021112-6021329,6021548-6021589,
6021680-6021721,6021929-6022028,6022149-6022210,
6022981-6023052
Length = 216
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 450 HEGQADRLRNQPHHVQGPRHTSWESGASALE 542
H G + L +QPHH QG H + G +L+
Sbjct: 126 HSGSSTVLADQPHHHQGLLHPHPDQGDHSLQ 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,302,037
Number of Sequences: 37544
Number of extensions: 432858
Number of successful extensions: 1311
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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