Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0224.Seq
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    52   5e-07
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    46   2e-05
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    32   0.56 
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    32   0.56 
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    32   0.56 
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    29   3.0  
Z82082-8|CAE53736.1|   83|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 27/58 (46%), Positives = 35/58 (60%)
 Frame = +1

Query: 286 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 459
           + KQI  E+ AS  YL+M  YF  D V  P  AK F + + EEREHAT+L+    +RG
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG 73



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 47/90 (52%)
 Frame = +3

Query: 492 VQGPRHTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYK 671
           +Q P +  W +   A E AL LE     S+ ++  T   + ND HL D++  ++LDEQ K
Sbjct: 81  IQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTA-GNHNDAHLTDFIEEKYLDEQVK 139

Query: 672 GQRDLAGKASTLKKMMDKHAALGDFIFRQE 761
              + A   + LK++      +G+++F +E
Sbjct: 140 SINEFARMVANLKRV---GPGVGEYVFDKE 166


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%)
 Frame = +1

Query: 286 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 459
           + KQI  E+ AS  YL+M A+F  D +     AK F + + EER HAT+L+    +RG
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG 73



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/91 (27%), Positives = 44/91 (48%)
 Frame = +3

Query: 489 HVQGPRHTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 668
           ++Q P    W +   A E AL LE     S+ ++    E   ND HL +Y+  ++L+EQ 
Sbjct: 80  NIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQR-NDAHLTNYIQEKYLEEQV 138

Query: 669 KGQRDLAGKASTLKKMMDKHAALGDFIFRQE 761
               + A   + +K+       LG+++F +E
Sbjct: 139 HSINEFARHIANIKR---AGPGLGEYLFDKE 166


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 533  SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLD 703
            SP+  PQ    + Q      QD   E L R+ P    V  +P  ++  P+RP +  LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLD 2006


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 533  SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLD 703
            SP+  PQ    + Q      QD   E L R+ P    V  +P  ++  P+RP +  LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLD 2028


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
           protein R11A8.7d protein.
          Length = 1427

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 533 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLD 703
           SP+  PQ    + Q      QD   E L R+ P    V  +P  ++  P+RP +  LD
Sbjct: 792 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLD 849


>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
           protein R11A8.7c protein.
          Length = 1405

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 533 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLD 703
           SP+  PQ    + Q      QD   E L R+ P    V  +P  ++  P+RP +  LD
Sbjct: 770 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLD 827


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 533  SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLD 703
            SP+  PQ    + Q      QD   E L R+ P    V  +P  ++  P+RP +  LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLD 2006


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 533  SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLD 703
            SP+  PQ    + Q      QD   E L R+ P    V  +P  ++  P+RP +  LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLD 2028


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 145 SYNHRFFDDIQKNMCS*KQ*LYKSSLY 65
           SYNHRFF  I K++ S K+ LYK+ ++
Sbjct: 99  SYNHRFF--IHKDISSDKKFLYKNDIF 123


>Z82082-8|CAE53736.1|   83|Caenorhabditis elegans Hypothetical
           protein ZC334.11 protein.
          Length = 83

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 616 LKLLSQVLMTSRMLLVTSLSSLRACSRADAPLSHDVWRGPC 494
           L LL  +++T+   L  S ++ R C R   P  + +  GPC
Sbjct: 6   LILLCALVLTTMAFLAPSTAAKRRCGRRLIPYVYSICGGPC 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,582
Number of Sequences: 27780
Number of extensions: 325113
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)