Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0223.Seq
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 76 5e-15
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 75 1e-14
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 3.0
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.0
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 27 4.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.0
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 26 7.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 9.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.3
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.3
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 9.3
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 76.2 bits (179), Expect = 5e-15
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 511 VQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCVD--LPTIVPATALAVVEMLKRFN 684
VQLP+P +NER V ++I P KD+DGF NIG L + P P T ++E+LK
Sbjct: 128 VQLPLPKHLNERTVTESITPPKDVDGFGAFNIGLLAKNDATPIHYPCTPKGIMELLKDNK 187
Query: 685 IDTFGRNAVVIGRSKNVGMPIAMMLHATRDT 777
I G NAVV+GRS VG PI+ +L T
Sbjct: 188 ISVAGLNAVVLGRSDIVGNPISYLLRKDNAT 218
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = +2
Query: 314 NRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDN 493
N P + + VG S+ YVR K +AA+ VGID I LL E++ LN+D+
Sbjct: 62 NFKPALAIVQVGKREDSNVYVRMKEKAARLVGIDFKYCPFPETIQMPALLHELKKLNDDH 121
Query: 494 NVDGI 508
V G+
Sbjct: 122 TVHGV 126
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +1
Query: 511 VQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLC--VDLPTIVPATALAVVEMLKRFN 684
VQLP+P INE+ + +A+APEKD+DGF N+G+L P T ++ +LK +
Sbjct: 97 VQLPLPAHINEQIITEAVAPEKDVDGFCETNLGKLTKREGQPLFTACTPKGIMCILKHYG 156
Query: 685 IDTFGRNAVVIGRSKNVGMPIAMMLHATRDT 777
I+ G++AVVIGRS VG P++++L T
Sbjct: 157 INVQGKHAVVIGRSNIVGRPMSILLEKANAT 187
Score = 52.0 bits (119), Expect = 9e-08
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 SIAMEIKKELKQKIAQWVSLGNRAP-TIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTI 427
S+A ++++EL+++I+ S+ +++ I VG S+ YVR K AA GI +
Sbjct: 9 SLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANEAGISCEHV 68
Query: 428 NRDSDITEEQLLSEIQNLNEDNNVDGI 508
N DITE LL I+ NED V GI
Sbjct: 69 NFPEDITEYDLLLAIKGFNEDPTVHGI 95
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 416 ALTINRDSDITEEQLLSEIQNLNEDNNVDGISSNYLY 526
AL + RD+DI LS+ N+N DN+ SNY Y
Sbjct: 468 ALNLPRDTDIKATPNLSQSGNINSDNS---DLSNYPY 501
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 482 NEDNNVDGISSNYLYLIQLMRGE 550
N+DN+V +SSN + +QL RG+
Sbjct: 53 NDDNSVITLSSNTMETLQLFRGD 75
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 714 DRSFQKRRYAYRYDAACDK 770
D S QK Y Y Y ACDK
Sbjct: 140 DASLQKAIYIYTYPLACDK 158
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 335 CIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLN 484
CI+VGD T + + A I + +N D+D + L+ E + ++
Sbjct: 1872 CILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMD--LIGEYEQID 1919
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 544 RRVCDAIAPEKDIDGFHIINIGRLCVDLPTIV 639
RR C A+ K ID + G LC DL +++
Sbjct: 293 RRSCLALTKNKRIDSYERALYGALCGDLNSVL 324
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -3
Query: 624 IHTQPSDVDYVETIDIFFRSNSIANSP 544
IHTQ S++ Y+ ++D+ + +++ P
Sbjct: 2206 IHTQSSELPYLSSVDVTTHAKILSSHP 2232
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 245 WQSIAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVR 379
++++A K++L Q + Q+ S + IRCI+ ++ HT+ R
Sbjct: 623 FRTVAQRHKEQLNQLMNQFNS--TQPHFIRCIVPNEEKKMHTFNR 665
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.3
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -1
Query: 716 ITTALRPNVSMLNLFSISTTA---NAVAGTMVGRSTHSLPMLIMWKPSISFSGAIASQTL 546
++T+ PN S ++++ ST A N+++ + ST +P S S SQT+
Sbjct: 544 VSTSYIPNASS-SVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTV 602
Query: 545 LSLIVSGTGNWT 510
S+ SGT + T
Sbjct: 603 SSITASGTTSST 614
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 668 ISTTANAVAGTMVGRSTHSLPMLIMWKPSISFSGAIASQTLLSLIVSGTGN 516
IST+ + G VGR +WKP + + + L S IV+ N
Sbjct: 348 ISTSDHETGGLTVGRQVSKKYPEYLWKPQVLSLALHSIEYLASAIVNHNQN 398
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 323 PTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNNVD 502
PT+ ++ +DP + +R V A V L DS + E+Q++ ++ L +DN+ D
Sbjct: 521 PTLEQLV--NDPIPN--IRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLLEQLTKDNDPD 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,334
Number of Sequences: 5004
Number of extensions: 68780
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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