Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0223.Seq
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 86 3e-17
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 81 7e-16
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 80 2e-15
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 31 0.78
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 29 3.2
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 29 4.2
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 4.2
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 29 4.2
02_02_0109 + 6830802-6833412,6833491-6833861 28 7.3
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 28 7.3
05_01_0499 - 4166891-4166942,4167191-4167510 28 9.6
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = +1
Query: 511 VQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCVD--LPTIVPATALAVVEMLKRFN 684
VQLP+P +N+ + +A++ EKD+DGFH +NIGRL + P VP T +E+L R+
Sbjct: 174 VQLPLPHHMNDENILNAVSIEKDVDGFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHRYG 233
Query: 685 IDTFGRNAVVIGRSKNVGMPIAMMLHATRDT 777
++ G+ AVVIGRS VGMP A++L T
Sbjct: 234 VEIKGKRAVVIGRSNIVGMPAALLLQKANAT 264
Score = 58.8 bits (136), Expect = 5e-09
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +2
Query: 254 IAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINR 433
+A +I++E+ +IA+ P + I+VG S TYVRNK +A + VGI + +N
Sbjct: 88 VAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVGIKSYEVNL 147
Query: 434 DSDITEEQLLSEIQNLNEDNNVDGI 508
D +E+++L I N D +V GI
Sbjct: 148 PEDSSEDEVLKHIATFNSDPSVHGI 172
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 81.4 bits (192), Expect = 7e-16
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Frame = +1
Query: 511 VQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCV--DLPTIVPATALAVVEMLKRFN 684
VQLP+P ++E R+ AI+ EKD+DGFH +N+G L + P VP A A +E+L +
Sbjct: 192 VQLPLPQHMDEERILSAISLEKDVDGFHPLNVGNLALRSRKPLFVPCAAKACLELLLQSG 251
Query: 685 IDTFGRNAVVIGRSKNVGMPIAMML---HAT 768
I+ G++ VIGRSK VG+P +++L HAT
Sbjct: 252 IELMGKHVTVIGRSKVVGLPTSLLLQRHHAT 282
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/87 (28%), Positives = 49/87 (56%)
Frame = +2
Query: 248 QSIAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTI 427
+S+A +I+ ++ +++ Q + P + ++VGD S +YVR K++ + VGI +L
Sbjct: 104 KSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVGIKSLLA 163
Query: 428 NRDSDITEEQLLSEIQNLNEDNNVDGI 508
+ TE+ ++ + NED +V GI
Sbjct: 164 ELPGNCTEDVVVDSVSRFNEDPSVHGI 190
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Frame = +1
Query: 511 VQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCVD--LPTIVPATALAVVEMLKRFN 684
VQLP+P INE ++ + I+ EKD+DGFH +NIG+L + P +P T +E+L R
Sbjct: 96 VQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTRSG 155
Query: 685 IDTFGRNAVVIGRSKNVGMPIAMML 759
+ G+ AVV+GRS VG+P++++L
Sbjct: 156 VTINGKRAVVVGRSNIVGLPVSLLL 180
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/87 (34%), Positives = 50/87 (57%)
Frame = +2
Query: 248 QSIAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTI 427
+++A +I++E+ +A S N P + +IVG S TYV+ K +A VGI ++ +
Sbjct: 8 KAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEVGIRSVDV 67
Query: 428 NRDSDITEEQLLSEIQNLNEDNNVDGI 508
+ DI+E L++E+ LN D V GI
Sbjct: 68 DLAEDISEAALVAEVHRLNADPAVHGI 94
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -1
Query: 425 LLMHRCPQILQLQLCS*HRCGSLGHRQQL--YSEWW-ELGFQDSPTVLFFAS 279
L + CP + ++ LCS H CG L +Q+ S+WW +L ++D V S
Sbjct: 854 LRVEDCPNLRRIPLCSTHNCGKL---KQICGSSDWWKKLLWEDKEAVAHMES 902
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 29.5 bits (63), Expect = 3.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 594 HNQHRKAVCGSTYHCAGYS 650
H +++ +CGST+HC +S
Sbjct: 44 HTSYKQGICGSTFHCRYFS 62
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = -1
Query: 608 PMLIMWKPSISFSGAIASQTLLSLIVSGTG----NWTKFHQHYYLHLNFGSQREVVLQLY 441
P+L+ + IA L VS TG NWT+ H Y H + G Q VV+ L
Sbjct: 270 PLLVTDARLDALCARIAKYYSLRRFVSATGEPAANWTRRHDERYFHYSSGMQ-AVVMALG 328
Query: 440 HC 435
C
Sbjct: 329 VC 330
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 714 HDRVATECVDVKSFQHFHYSQCCSRHN 634
+ ++A EC D K + H H S+CCS ++
Sbjct: 368 YSQIANECRDGK-YSHCHDSECCSSYH 393
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 782 AFVSLVACSIIAIGIPTFLERPITTALRPNVSMLNLFSISTTANAVAG 639
A ++L + I + +P L + TA+RP + +NL + ++ +AG
Sbjct: 159 ACIALTSLLIRTLTVPLLLNQMKATAMRPEIEAINLEMRTISSTRIAG 206
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 713 TTALRPNVSMLNLFSISTTANAVAGTM 633
T + PNVS LNL I ++N + GT+
Sbjct: 280 TGEIEPNVSALNLVEIDVSSNELIGTI 306
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 200 YSLCKHSKHHGAYPRWQSIAMEIKKELKQK 289
Y LC H KHHG P Q + K E QK
Sbjct: 349 YFLC-HKKHHGQQPPVQELTTPPKAEPSQK 377
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 262 GDKEGAEAKNSTVGESWKPSSHHSLY 339
G K GA +S G+ WK S H+ +
Sbjct: 47 GSKNGASPSSSAHGQHWKDQSRHAAF 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,364,620
Number of Sequences: 37544
Number of extensions: 418741
Number of successful extensions: 1122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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