Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0223.Seq
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018) 43 2e-04
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.8
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 30 2.4
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_35016| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8) 29 3.2
SB_52945| Best HMM Match : RVT_1 (HMM E-Value=7.2e-19) 29 5.6
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) 28 7.4
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_22430| Best HMM Match : DUF498 (HMM E-Value=3.7) 28 7.4
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048) 28 7.4
SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14) 28 7.4
SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6) 28 9.8
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
Length = 101
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +1
Query: 511 VQLPVPDTIN--ERRVC-DAIAPEKDIDGFHIINIGRLC-VDLPT-IVPATALAVVEMLK 675
VQLP PD+ N + +C +A+ PEKD+DG H N GRL +L T IVP T +E++K
Sbjct: 40 VQLP-PDSENPIDPGICTNAVIPEKDVDGLHDENAGRLARGELATCIVPCTPRGCLELIK 98
Query: 676 R 678
+
Sbjct: 99 K 99
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 245 WQSIAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDD 355
WQ++ ++ K+LKQK+ + GNR + ++ DD
Sbjct: 27 WQNLYLDQLKQLKQKVTSTIDYGNRIIGLDLVVRNDD 63
>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 368
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/34 (35%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +3
Query: 60 ILRKLFYLLMTILLVVFSLLMNFVVIKS-CLLHK 158
++ K+F ++TIL+++F+LL N +V+ + C H+
Sbjct: 32 VVFKIFQAMITILIIIFALLGNILVVYAFCNYHR 65
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +2
Query: 161 AIKN*ISKLNNLHYSLCKHSKHHGAYPRWQSIAMEIKKELKQKIAQWVSLGNRAPTIRCI 340
+IK I K L Y+ KH +H A+ +++ + +KK L + +++VS + +
Sbjct: 348 SIKRLIRKKQRL-YNHAKHCNNHAAWKKFKDLRKLVKKNLAKAHSEYVS------QLLTV 400
Query: 341 IVGDDPASHTYVR 379
G + A+HT +
Sbjct: 401 PEGSETANHTITK 413
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 410 IDALTINRDSDIT--EEQLLSEIQNLNED 490
IDAL N+D D+T +E+L SE+Q E+
Sbjct: 663 IDALKQNKDKDVTALKEELTSEVQKYKEE 691
>SB_35016| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8)
Length = 412
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 161 AIKN*ISKLNNLHYSLCKHSKHHGAYPRWQSIAMEIKKELKQKIAQWVS 307
+IK I K L Y+ KH +H A+ +++ + +KK L + +++VS
Sbjct: 315 SIKRLIRKKQRL-YNHAKHCNNHAAWKKFKDLRKLVKKNLAKAHSEYVS 362
>SB_52945| Best HMM Match : RVT_1 (HMM E-Value=7.2e-19)
Length = 429
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 294 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMVVRKPLH 330
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Frame = +2
Query: 200 YSLCKHSKHHGAYPRWQSIAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVR 379
Y+ KH +H A+ +++ + +KK L + +++VS + + G + A+HT +
Sbjct: 561 YNHAKHCNNHAAWKKFKDLRKLVKKNLAKAHSEYVS------QLLTVPKGTETANHTITK 614
Query: 380 N-----KVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNNVDGIS 511
K + VG+ L ++ ++ + L+ + N N +N IS
Sbjct: 615 RFWTYIKSKKTHDVGVAPLRDDK-GELVSDSLVFKKGNKNIPSNYRPIS 662
>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 284 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 320
>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
Length = 858
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 738 TDVFGTTYHDRVATECVDVKSFQHFHYSQCCSRHNGR*IHTQPSDVDYVETID 580
+D T +D + T+ D QH H S+C IHT SD + + D
Sbjct: 778 SDSIHTQVNDSIHTQVSDSIHTQHSHVSKCQHSQVSDSIHTPVSDSIHTQVSD 830
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 375 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 411
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 620 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 656
>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 276 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 312
>SB_22430| Best HMM Match : DUF498 (HMM E-Value=3.7)
Length = 214
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 19 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 55
>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
Length = 1347
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 232 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 268
>SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14)
Length = 713
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 652 LAVVEMLKRFNIDTFGRNAVVIGRSKNVGMPIAMMLH 762
LA+V L+RF+ TFGR +V K + M + LH
Sbjct: 163 LAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLH 199
>SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6)
Length = 367
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 182 KLNNLHYSLCKHSKHHGAYPRWQSIA--MEIKKELKQKIAQ 298
K+ LH SL KH+ +H YP ++ ++ + K +K+ +A+
Sbjct: 157 KVAELHPSLKKHNANHLLYPNFRPVSNLPMVSKVIKKAVAE 197
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 182 KLNNLHYSLCKHSKHHGAYPRWQSIA--MEIKKELKQKIAQ 298
K+ LH SL KH+ +H YP ++ ++ + K +K+ +A+
Sbjct: 2258 KVAELHPSLKKHNANHLLYPNFRPVSNLPMVSKVIKKAVAE 2298
>SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 777 RVSCRMQHHSDRHTDVFGTTYHDRVATECVDVKSFQH 667
R+ R +HH+D +TD+ T H R D + H
Sbjct: 9 RMQTRYRHHTDANTDMLQTP-HRRTCRHATDTHVYAH 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,994,635
Number of Sequences: 59808
Number of extensions: 501265
Number of successful extensions: 1283
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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