Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0223.Seq
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    46   2e-05
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    32   0.40 
U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U67951-4|AAB07572.1|  398|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +2

Query: 263 EIKKELKQKIAQWVSLGNRAPTIRCII-VGDDPASHTYVRNKVEAAKFVGIDALTINRDS 439
           ++  ++ QKIA+          +  I+ VG+   S+ Y+ +K++ AK +G D   I    
Sbjct: 14  KVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAKEIGADGKLIKLPD 73

Query: 440 DITEEQLLSEIQNLNEDNNVDGI 508
            IT+  L  EI  LN DN +DGI
Sbjct: 74  TITQGDLKREIMALNHDNEIDGI 96



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
 Frame = +1

Query: 511 VQLPVP--DTINERRVCDAIAPEKDIDGFHIINIGRLC-VDLP-TIVPATALAVVEMLKR 678
           +QLP+     I+   V D I P KD+DG   IN GRL   +L  TI P T    + ++++
Sbjct: 98  IQLPLDCKHEIDADSVIDLIDPLKDVDGLTRINAGRLARGELQRTIFPCTPFGCLYLVQQ 157

Query: 679 FNID---TFGRNAVVIGRSKNVGMPIAMM 756
              D     G+  VV+GRSK VG P A +
Sbjct: 158 ATGDANFVSGKEVVVLGRSKIVGSPAAAL 186


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 254  IAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 388
            IA   +KEL ++ +  VSL +RA  I C + G  P  H    +K+
Sbjct: 1741 IAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 254  IAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 388
            IA   +KEL ++ +  VSL +RA  I C + G  P  H    +K+
Sbjct: 1741 IAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 254  IAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 388
            IA   +KEL ++ +  VSL +RA  I C + G  P  H    +K+
Sbjct: 1741 IAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785


>U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical
           protein T16A1.8 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 356 PASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNNV 499
           P SHT VRN+VE  K V +    +++D   T+ + +  +    +  NV
Sbjct: 301 PGSHTPVRNEVEIGK-VEVRTYIVSKDGIQTDPEKIKAVSKFPQPKNV 347


>Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical
           protein F32B6.8b protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 366 WLAGSSPTIIQRMVGARFPRLTH 298
           W AGS+P  ++ + GAR+P L H
Sbjct: 4   WSAGSTPGSVKPVYGARYPPLHH 26


>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 314 NRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNL 481
           +R PT  CI  G    S +      + +     DAL I  ++D+TE+QL S  +NL
Sbjct: 71  SRCPT-GCIFDGSILYSDSIKNFPKKCSTVCAPDALYIGYETDLTEKQLTSTFKNL 125


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 597 NQHRKAVCGSTYHCAGYSIGCSGNAEKI*HRHIRSQRGRDRSFQKRRYAYR 749
           N+ R  +CGS  +C+G ++  S N E +     R  R + R+ + R+   R
Sbjct: 218 NERRVELCGSRSYCSGNNLRSSSNKENLILEFKRKWRNQ-RNLRNRKVLRR 267


>U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical
           protein K08F11.5 protein.
          Length = 625

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 437 SDITEEQLLSEIQNLNEDNNVDGISSNYLYLIQLMRGEF 553
           S+I +  ++  + ++ +++ VDGI + +L LI+   GE+
Sbjct: 75  SEIRQANVICVVYSVTDESTVDGIQTKWLPLIRQSFGEY 113


>U67951-4|AAB07572.1|  398|Caenorhabditis elegans Hypothetical
           protein C47C12.4 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 437 SDITEEQLLSEIQNLNEDNNVDGISSNYLYLIQLMRGEF 553
           S+I +  ++  + ++ +++ VDGI + +L LI+   GE+
Sbjct: 15  SEIRQANVICVVYSVTDESTVDGIQTKWLPLIRQSFGEY 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,659
Number of Sequences: 27780
Number of extensions: 386855
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)