Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0222.Seq
(678 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P30979 Cluster: Uncharacterized HTH-type transcriptiona... 323 3e-87
UniRef50_Q32IV1 Cluster: Putative transcriptional regulator LYSR... 238 8e-82
UniRef50_A6T690 Cluster: Putative transcriptional regulator (Lys... 146 3e-34
UniRef50_Q8FJZ5 Cluster: Putative uncharacterized protein; n=2; ... 108 1e-22
UniRef50_A1A8Q4 Cluster: Putative uncharacterized protein; n=1; ... 98 2e-19
UniRef50_Q9XB48 Cluster: ORF 3; n=1; Escherichia coli|Rep: ORF 3... 75 2e-12
UniRef50_Q87IC4 Cluster: Putaive transcriptional regulator, LysR... 60 5e-08
UniRef50_Q9KTV6 Cluster: Transcriptional regulator, LysR family;... 58 2e-07
UniRef50_A0WZD3 Cluster: Transcriptional regulator, LysR family;... 56 1e-06
UniRef50_A6T413 Cluster: Transcriptional regulator, LysR family;... 54 2e-06
UniRef50_P77746 Cluster: Uncharacterized HTH-type transcriptiona... 54 2e-06
UniRef50_A6T677 Cluster: Putative transcriptional regulator; n=1... 54 3e-06
UniRef50_Q47ZN8 Cluster: Transcriptional regulator, LysR family;... 54 4e-06
UniRef50_Q3ZUZ6 Cluster: Putative uncharacterized protein; n=2; ... 54 4e-06
UniRef50_A6CXP0 Cluster: Transcriptional regulator, LysR family ... 54 4e-06
UniRef50_Q629U6 Cluster: Transcriptional regulator, LysR family;... 53 6e-06
UniRef50_A6EYC4 Cluster: LysR family regulatory protein; n=1; Ma... 52 1e-05
UniRef50_Q8D593 Cluster: Transcriptional regulator; n=4; Vibrion... 52 2e-05
UniRef50_A6AQH2 Cluster: Transcriptional regulator, LysR family;... 51 2e-05
UniRef50_Q89IY7 Cluster: Transcriptional regulatory protein; n=1... 51 3e-05
UniRef50_Q5LKP3 Cluster: Transcriptional regulator, LysR family;... 50 4e-05
UniRef50_Q1MK05 Cluster: Putative LysR family transcriptional re... 50 4e-05
UniRef50_Q9I0Z0 Cluster: Transcriptional regulator MexT; n=28; P... 50 5e-05
UniRef50_Q5LVV7 Cluster: Transcriptional regulator, LysR family;... 50 5e-05
UniRef50_P10183 Cluster: HTH-type transcriptional activator nahR... 50 5e-05
UniRef50_A0X0Y3 Cluster: Transcriptional regulator, LysR family;... 49 1e-04
UniRef50_Q1YUH5 Cluster: Nodulation protein d1; n=1; gamma prote... 48 2e-04
UniRef50_Q081Z6 Cluster: Transcriptional regulator, LysR family ... 48 3e-04
UniRef50_P52679 Cluster: PCP degradation transcriptional activat... 47 4e-04
UniRef50_Q3S4D5 Cluster: LysR-like regular protein; n=1; Polarom... 47 5e-04
UniRef50_Q1MWN1 Cluster: LysR-type regulatory protein; n=1; Sphi... 47 5e-04
UniRef50_Q11CG0 Cluster: Transcriptional regulator, LysR family;... 47 5e-04
UniRef50_Q397L7 Cluster: Transcriptional regulator, LysR family;... 46 6e-04
UniRef50_Q0BYJ0 Cluster: Transcriptional regulator, LysR family;... 46 8e-04
UniRef50_Q6LJ04 Cluster: Hypothetical transcriptional regulator;... 46 0.001
UniRef50_Q12M05 Cluster: LysR, substrate-binding; n=3; Gammaprot... 46 0.001
UniRef50_A6W1I8 Cluster: Transcriptional regulator, LysR family;... 46 0.001
UniRef50_A5FEQ6 Cluster: Transcriptional regulator, LysR family;... 46 0.001
UniRef50_Q12H69 Cluster: Transcriptional regulator, LysR family;... 45 0.001
UniRef50_A6EW06 Cluster: Transcriptional regulator; n=1; Marinob... 45 0.001
UniRef50_A1U796 Cluster: Transcriptional regulator, LysR family;... 45 0.002
UniRef50_A0LD87 Cluster: Transcriptional regulator, LysR family;... 45 0.002
UniRef50_Q7WEF9 Cluster: LysR family regulatory protein; n=5; Bu... 44 0.003
UniRef50_Q7W2A6 Cluster: Transcriptional regulator; n=3; Bordete... 44 0.003
UniRef50_Q39JH6 Cluster: Transcriptional regulator, LysR family;... 44 0.003
UniRef50_Q486J0 Cluster: Transcriptional regulator, LysR family;... 44 0.003
UniRef50_Q3KA14 Cluster: Transcriptional Regulator, LysR family;... 44 0.003
UniRef50_A6U9H6 Cluster: Transcriptional regulator, LysR family;... 44 0.003
UniRef50_A6TGG7 Cluster: Putative bacterial regulatory protein, ... 44 0.003
UniRef50_A6EZR5 Cluster: Transcriptional regulator, LysR family ... 44 0.003
UniRef50_A5L3Z3 Cluster: Transcriptional regulator; n=3; Vibrion... 44 0.003
UniRef50_A0IJM6 Cluster: Transcriptional regulator, LysR family;... 44 0.003
UniRef50_P46924 Cluster: Probable HTH-type transcriptional regul... 44 0.003
UniRef50_Q5E3C2 Cluster: Transcriptional regulators, LysR family... 44 0.005
UniRef50_Q392L0 Cluster: Transcriptional regulator, LysR family;... 44 0.005
UniRef50_Q1Z3B6 Cluster: Probable Transcription regulator, LysR ... 44 0.005
UniRef50_Q1M9F6 Cluster: Putative LysR-family transcriptional re... 44 0.005
UniRef50_Q13QG3 Cluster: Transcriptional regulator, LysR family;... 44 0.005
UniRef50_A6F7Q1 Cluster: Transcriptional regulatory protein; n=1... 44 0.005
UniRef50_A4XX96 Cluster: Transcriptional regulator, LysR family;... 44 0.005
UniRef50_Q8YZV2 Cluster: Transcriptional regulator; n=2; Nostoca... 43 0.006
UniRef50_Q6D192 Cluster: LysR-family transcriptional regulator; ... 43 0.006
UniRef50_Q5E5X9 Cluster: Transcriptional regulators, LysR family... 43 0.006
UniRef50_Q399F7 Cluster: Transcriptional regulator, LysR family;... 43 0.006
UniRef50_A6W028 Cluster: Transcriptional regulator, LysR family;... 43 0.006
UniRef50_A6VS92 Cluster: Transcriptional regulator, LysR family;... 43 0.006
UniRef50_A5L763 Cluster: Transcriptional regulator; n=1; Vibrion... 43 0.006
UniRef50_A3RTM4 Cluster: NahR; n=7; Burkholderiales|Rep: NahR - ... 43 0.006
UniRef50_A0LD88 Cluster: Transcriptional regulator, LysR family;... 43 0.006
UniRef50_Q5E7C7 Cluster: Transcriptional regulators, LysR family... 43 0.008
UniRef50_Q2SG65 Cluster: Transcriptional regulator; n=1; Hahella... 43 0.008
UniRef50_Q2IYM8 Cluster: Transcriptional regulator, LysR family;... 43 0.008
UniRef50_Q1YXP8 Cluster: Transcriptional regulators, LysR family... 43 0.008
UniRef50_Q1YQB9 Cluster: Transcriptional regulator, LysR family ... 43 0.008
UniRef50_A6D744 Cluster: Putative transcriptional regulator; n=1... 43 0.008
UniRef50_Q8KY13 Cluster: LysR-type transcriptional activator; n=... 42 0.010
UniRef50_Q13JD9 Cluster: Transcriptional regulator, LysR family;... 42 0.010
UniRef50_A6GJJ5 Cluster: Regulatory protein, LysR:LysR, substrat... 42 0.010
UniRef50_A2W526 Cluster: Transcriptional regulator; n=6; Burkhol... 42 0.010
UniRef50_Q9KP88 Cluster: Transcriptional regulator, LysR family;... 42 0.014
UniRef50_Q9RH96 Cluster: LeuO homolog; n=4; Salmonella|Rep: LeuO... 42 0.014
UniRef50_Q2CK92 Cluster: Transcriptional regulator, LysR family ... 42 0.014
UniRef50_Q9RQD4 Cluster: MexT; n=2; Alphaproteobacteria|Rep: Mex... 42 0.018
UniRef50_A0Y2S4 Cluster: Regulatory protein, LysR:LysR, substrat... 42 0.018
UniRef50_A0KG94 Cluster: Transcriptional regulator, LysR family;... 42 0.018
UniRef50_P52698 Cluster: HTH-type transcriptional regulator phcA... 42 0.018
UniRef50_Q3KDF4 Cluster: Transcriptional Regulator, LysR family;... 41 0.024
UniRef50_Q38ZY8 Cluster: Transcriptional regulator, LysR family;... 41 0.024
UniRef50_Q2S713 Cluster: Transcriptional regulator; n=1; Hahella... 41 0.024
UniRef50_Q1R0T8 Cluster: Transcriptional regulator, LysR family;... 41 0.024
UniRef50_Q0SCY7 Cluster: Transcriptional regulator, LysR family ... 41 0.024
UniRef50_A6VZT8 Cluster: Transcriptional regulator, LysR family;... 41 0.024
UniRef50_A6CX36 Cluster: Transcriptional regulator; n=1; Vibrio ... 41 0.024
UniRef50_A6CUQ2 Cluster: Putative transcription regulator protei... 41 0.024
UniRef50_A3RVN4 Cluster: Transcriptional regulators, LysR family... 41 0.024
UniRef50_A3JFF7 Cluster: Transcriptional regulator; n=1; Marinob... 41 0.024
UniRef50_A0X8E8 Cluster: Transcriptional regulator, LysR family;... 41 0.024
UniRef50_A0V7D4 Cluster: Transcriptional regulator, LysR family;... 41 0.024
UniRef50_A0NZC9 Cluster: LysR family regulatory protein; n=3; Rh... 41 0.024
UniRef50_Q081K6 Cluster: Transcriptional regulator, LysR family ... 41 0.032
UniRef50_A6CVD4 Cluster: Transcriptional regulator, LysR family ... 41 0.032
UniRef50_A3RSL5 Cluster: Transcriptional regulators, LysR family... 41 0.032
UniRef50_A3JFT7 Cluster: Regulatory protein, LysR:LysR, substrat... 41 0.032
UniRef50_Q8XRG7 Cluster: Probable transcriptional regulator tran... 40 0.042
UniRef50_Q7VQS7 Cluster: LysR-family transcriptional regulator; ... 40 0.042
UniRef50_Q7D3Y4 Cluster: AGR_pAT_125p; n=3; Rhizobiaceae|Rep: AG... 40 0.042
UniRef50_Q1T7B6 Cluster: Putative LysR-type transcriptional acti... 40 0.042
UniRef50_A1SEI3 Cluster: Regulatory protein, LysR; n=1; Nocardio... 40 0.042
UniRef50_A1R1P0 Cluster: Putative transcriptional regulator, Lys... 40 0.042
UniRef50_A1K8D7 Cluster: Transcriptional regulator, LysR family;... 40 0.042
UniRef50_A0X570 Cluster: Transcriptional regulator, LysR family;... 40 0.042
UniRef50_Q8DBQ0 Cluster: LysR-like transcriptional regulator; n=... 40 0.056
UniRef50_Q2S7V2 Cluster: Transcriptional regulator; n=1; Hahella... 40 0.056
UniRef50_Q13GK2 Cluster: Transcriptional regulator, LysR family;... 40 0.056
UniRef50_A6PFD2 Cluster: Transcriptional regulator, LysR family;... 40 0.056
UniRef50_A6CV60 Cluster: Transcriptional regulator, LysR family ... 40 0.056
UniRef50_A3VWI6 Cluster: Transcriptional regulatory protein; n=1... 40 0.056
UniRef50_A1U8Q8 Cluster: Transcriptional regulator, LysR family;... 40 0.056
UniRef50_A0L2B3 Cluster: Transcriptional regulator, LysR family ... 40 0.056
UniRef50_A0J9T3 Cluster: Transcriptional regulator, LysR family;... 40 0.056
UniRef50_Q9L122 Cluster: Putative LysR-family transcriptional re... 40 0.074
UniRef50_Q8D7J2 Cluster: Transcriptional regulator; n=8; Vibrion... 40 0.074
UniRef50_Q39AY8 Cluster: Transcriptional regulator, LysR family;... 40 0.074
UniRef50_A6W2N0 Cluster: Transcriptional regulator, LysR family;... 40 0.074
UniRef50_A6VUW1 Cluster: Transcriptional regulator, LysR family;... 40 0.074
UniRef50_A5W6N3 Cluster: Transcriptional regulator, LysR family;... 40 0.074
UniRef50_A4SSQ1 Cluster: Transcriptional regulator, LysR family;... 40 0.074
UniRef50_A1YBP6 Cluster: Amb1; n=2; Sorangium cellulosum|Rep: Am... 40 0.074
UniRef50_A1RPU3 Cluster: Transcriptional regulator, LysR family;... 40 0.074
UniRef50_Q1N663 Cluster: Regulatory protein, LysR:LysR, substrat... 39 0.097
UniRef50_A6PC87 Cluster: Transcriptional regulator, LysR family;... 39 0.097
UniRef50_A4YPA1 Cluster: Putative transcriptional regulator, Lys... 39 0.097
UniRef50_Q5NN80 Cluster: Transcriptional regulator; n=1; Zymomon... 39 0.13
UniRef50_A7K0S8 Cluster: Transcriptional regulator; n=7; Vibrio|... 39 0.13
UniRef50_A6T867 Cluster: Putative bacterial regulatory protein, ... 39 0.13
UniRef50_A6F5F0 Cluster: Transcriptional regulator, LysR family ... 39 0.13
UniRef50_A6CWQ5 Cluster: Transcriptional regulator, LysR family ... 39 0.13
UniRef50_A5WFF1 Cluster: Transcriptional regulator, LysR family;... 39 0.13
UniRef50_A4BDX8 Cluster: Probable transcriptional regulator; n=1... 39 0.13
UniRef50_Q7WJY9 Cluster: Probable LysR-family transcription regu... 38 0.17
UniRef50_Q7WBR9 Cluster: LysR-family transcriptional regulator; ... 38 0.17
UniRef50_Q489T6 Cluster: Transcriptional regulator, LysR family;... 38 0.17
UniRef50_Q393C2 Cluster: Transcriptional regulator, LysR family;... 38 0.17
UniRef50_A6V8B0 Cluster: Transcriptional regulator, LysR family;... 38 0.17
UniRef50_A5IDS9 Cluster: Transcriptional regulator; n=4; Legione... 38 0.17
UniRef50_A4BGW0 Cluster: Probable transcription regulator protei... 38 0.17
UniRef50_A3QHS2 Cluster: Transcriptional regulator, LysR family;... 38 0.17
UniRef50_A1WRT3 Cluster: Transcriptional regulator, LysR family;... 38 0.17
UniRef50_Q7P075 Cluster: Transcription regulator protein; n=2; B... 38 0.22
UniRef50_Q7MCL9 Cluster: Putative transcriptional regulator; n=1... 38 0.22
UniRef50_Q5NYN4 Cluster: Transcriptional regulator; n=3; Rhodocy... 38 0.22
UniRef50_Q4ZT12 Cluster: Regulatory protein, LysR:LysR, substrat... 38 0.22
UniRef50_Q46T42 Cluster: Regulatory protein, LysR:LysR, substrat... 38 0.22
UniRef50_Q9RBU0 Cluster: PnbR; n=2; Burkholderiaceae|Rep: PnbR -... 38 0.22
UniRef50_Q0ARX0 Cluster: Transcriptional regulator, LysR family;... 38 0.22
UniRef50_A6P8I1 Cluster: Transcriptional regulator, LysR family;... 38 0.22
UniRef50_A0GQF0 Cluster: Transcriptional regulator, LysR family;... 38 0.22
UniRef50_Q8NTT1 Cluster: Transcriptional regulator; n=1; Coryneb... 38 0.30
UniRef50_Q8DDK3 Cluster: Transcriptional regulator; n=22; Gammap... 38 0.30
UniRef50_Q8D5G7 Cluster: Transcriptional regulator; n=1; Vibrio ... 38 0.30
UniRef50_Q47ZG5 Cluster: Transcriptional regulator, LysR family;... 38 0.30
UniRef50_Q1GIZ4 Cluster: Transcriptional regulator LysR family; ... 38 0.30
UniRef50_Q16B23 Cluster: Transcriptional regulator, LysR family,... 38 0.30
UniRef50_A6X639 Cluster: Transcriptional regulator, LysR family;... 38 0.30
UniRef50_A6TAT5 Cluster: Putative transcriptional regulator; n=1... 38 0.30
UniRef50_A6E2S9 Cluster: Transcriptional regulator, LysR family ... 38 0.30
UniRef50_A5WDE8 Cluster: Transcriptional regulator, LysR family;... 38 0.30
UniRef50_A4EYL1 Cluster: Transcriptional regulator, LysR family ... 38 0.30
UniRef50_A4B7L6 Cluster: Transcriptional regulator; n=1; Alterom... 38 0.30
UniRef50_Q08812 Cluster: HTH-type transcriptional regulator syrM... 38 0.30
UniRef50_Q15UP0 Cluster: Transcriptional regulator, LysR family;... 37 0.39
UniRef50_A5KW47 Cluster: Transcriptional regulator, LysR family ... 37 0.39
UniRef50_A3XZ21 Cluster: Putative LysR-type regulator; n=1; Vibr... 37 0.39
UniRef50_A0HDG7 Cluster: Transcriptional regulator, LysR family;... 37 0.39
UniRef50_Q89SR8 Cluster: Transcriptional regulatory protein; n=1... 37 0.52
UniRef50_Q5LN55 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_Q39GR6 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_Q2BJ61 Cluster: Transcriptional regulator, LysR family ... 37 0.52
UniRef50_Q12EW0 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_A7CJC1 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_A6E126 Cluster: Transcriptional regulator, LysR family ... 37 0.52
UniRef50_A6AKJ3 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_A4Z170 Cluster: Putative transcriptional regulatory pro... 37 0.52
UniRef50_A3X6E2 Cluster: Transcriptional regulatory protein; n=1... 37 0.52
UniRef50_A0VV67 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_A0KIB7 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_A0IIW1 Cluster: Transcriptional regulator, LysR family;... 37 0.52
UniRef50_Q98E29 Cluster: Transcriptional regulator; n=2; Proteob... 36 0.69
UniRef50_Q8EAM4 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_Q6MJZ8 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_Q5P743 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_Q5LNL1 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_Q481E9 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_Q471I4 Cluster: Regulatory protein, LysR:LysR, substrat... 36 0.69
UniRef50_Q2CCM2 Cluster: Transcriptional regulator, LysR family ... 36 0.69
UniRef50_A6VUM5 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_A6FDU8 Cluster: Transcriptional regulator, LysR family ... 36 0.69
UniRef50_A5VCH0 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_A1B755 Cluster: Transcriptional regulator, LysR family;... 36 0.69
UniRef50_Q88LJ0 Cluster: Transcriptional regulator, LysR family;... 36 0.91
UniRef50_Q6FFS4 Cluster: Putative transcriptional regulator DNA-... 36 0.91
UniRef50_Q5E0V6 Cluster: Transcriptional regulator; n=1; Vibrio ... 36 0.91
UniRef50_Q1MJF9 Cluster: Putative LysR family transcriptional re... 36 0.91
UniRef50_A6PEH3 Cluster: Transcriptional regulator, LysR family;... 36 0.91
UniRef50_A4W5X5 Cluster: Transcriptional regulator, LysR family;... 36 0.91
UniRef50_A4SYM5 Cluster: Transcriptional regulator, LysR family;... 36 0.91
UniRef50_A3RPR5 Cluster: Transcriptional regulators, LysR family... 36 0.91
UniRef50_A1JMX6 Cluster: Putative LysR-family transcriptional re... 36 0.91
UniRef50_A0JW61 Cluster: Transcriptional regulator, LysR family;... 36 0.91
UniRef50_Q8ZS13 Cluster: Putative LysR family transcriptional re... 36 1.2
UniRef50_Q8D5M9 Cluster: Transcriptional regulator; n=3; Vibrio|... 36 1.2
UniRef50_Q7CTM2 Cluster: AGR_L_1856p; n=2; Agrobacterium tumefac... 36 1.2
UniRef50_Q1ZAV3 Cluster: Transcriptional regulators, LysR family... 36 1.2
UniRef50_A6GE91 Cluster: Probable transcription regulator protei... 36 1.2
UniRef50_A4AX23 Cluster: Transcriptional regulator, LysR family ... 36 1.2
UniRef50_Q8ZKY0 Cluster: HTH-type transcriptional regulator yidZ... 36 1.2
UniRef50_Q87PW8 Cluster: Transcriptional regulator, LysR family;... 35 1.6
UniRef50_Q7VS13 Cluster: LysR-family transcriptional regulator; ... 35 1.6
UniRef50_Q5E1I8 Cluster: Transcriptional regulators, LysR family... 35 1.6
UniRef50_Q5W9E2 Cluster: Putative LysR-type transcriptional regu... 35 1.6
UniRef50_A7HRT9 Cluster: Transcriptional regulator, LysR family;... 35 1.6
UniRef50_A3XWH7 Cluster: Transcriptional regulator, LysR family ... 35 1.6
UniRef50_A1K8I6 Cluster: Transcriptional regulator, LysR family;... 35 1.6
UniRef50_A0HLX7 Cluster: Transcriptional regulator, LysR family;... 35 1.6
UniRef50_Q9KVS1 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_Q7MNI1 Cluster: Transcriptional regulator; n=5; Gammapr... 35 2.1
UniRef50_Q63PA4 Cluster: LysR-family transcriptional regulator; ... 35 2.1
UniRef50_Q4KHX1 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_Q394G2 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A6CZZ4 Cluster: Putative transcription regulator protei... 35 2.1
UniRef50_A5V6I2 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A5CSX6 Cluster: Putative transcriptional regulator, Lys... 35 2.1
UniRef50_A4X0G3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_A4F7Y9 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A1G103 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A1FFV7 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A0VSK5 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A0NXF9 Cluster: Probable transcription regulator protei... 35 2.1
UniRef50_A0KKG7 Cluster: HTH-type transcriptional regulator YidZ... 35 2.1
UniRef50_A0J9T4 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_A0J3K4 Cluster: Transcriptional regulator, LysR family;... 35 2.1
UniRef50_Q62E17 Cluster: Transcriptional regulator, LysR family;... 34 2.8
UniRef50_Q5LR91 Cluster: Transcriptional regulator, LysR family;... 34 2.8
UniRef50_Q477L7 Cluster: Regulatory protein, LysR:LysR, substrat... 34 2.8
UniRef50_Q39J39 Cluster: Transcriptional regulator, LysR family;... 34 2.8
UniRef50_Q9FD34 Cluster: PnbR; n=2; Pseudomonas|Rep: PnbR - Pseu... 34 2.8
UniRef50_Q0B1J5 Cluster: Transcriptional regulator, LysR family;... 34 2.8
UniRef50_Q085G5 Cluster: Transcriptional regulator, LysR family ... 34 2.8
UniRef50_A6VSJ2 Cluster: Transcriptional regulator, LysR family;... 34 2.8
UniRef50_A4GJC2 Cluster: Transcriptional regulator LysR family p... 34 2.8
UniRef50_P77744 Cluster: HTH-type transcriptional regulator abgR... 34 2.8
UniRef50_Q89WJ1 Cluster: Transcriptional regulatory protein; n=1... 34 3.7
UniRef50_Q87JJ8 Cluster: Transcriptional regulator, LysR family;... 34 3.7
UniRef50_Q4FSR3 Cluster: Transcriptional regulatory protein, Lys... 34 3.7
UniRef50_Q39IT2 Cluster: Transcriptional regulator, LysR family;... 34 3.7
UniRef50_Q39B16 Cluster: Transcriptional regulator, LysR family;... 34 3.7
UniRef50_Q097I8 Cluster: Regulatory protein, LysR:LysR, substrat... 34 3.7
UniRef50_A6TAT8 Cluster: Putative bacterial regulatory protein, ... 34 3.7
UniRef50_Q5E1J2 Cluster: Transcriptional regulators, LysR family... 33 4.8
UniRef50_Q3W325 Cluster: Regulatory protein, LysR:LysR substrate... 33 4.8
UniRef50_Q1ZB78 Cluster: Transcriptional regulator, LysR family ... 33 4.8
UniRef50_Q18SA2 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding;... 33 4.8
UniRef50_A7JY25 Cluster: Transcriptional regulator; n=5; Vibrio|... 33 4.8
UniRef50_A4WEP5 Cluster: Transcriptional regulator, LysR family;... 33 4.8
UniRef50_A3JD31 Cluster: Transcriptional regulator, LysR family ... 33 4.8
UniRef50_A0Z258 Cluster: Transcriptional regulator, LysR family ... 33 4.8
UniRef50_Q92YJ4 Cluster: Putative LysR-family transcriptional re... 33 6.4
UniRef50_Q5YTB7 Cluster: Putative transcriptional regulator; n=1... 33 6.4
UniRef50_Q5WL22 Cluster: LysR family transcriptional regulator; ... 33 6.4
UniRef50_Q3HKF7 Cluster: Transcriptional regulator, LysR family;... 33 6.4
UniRef50_Q1Z9L0 Cluster: Putative transcriptional regulator, Lys... 33 6.4
UniRef50_Q1V9Y1 Cluster: Transcriptional regulator, LysR family ... 33 6.4
UniRef50_Q11H84 Cluster: Transcriptional regulator, LysR family;... 33 6.4
UniRef50_Q0FX50 Cluster: Transcriptional regulator, LysR family ... 33 6.4
UniRef50_A6F7C1 Cluster: Transcriptional regulator; n=1; Moritel... 33 6.4
UniRef50_A6B1V6 Cluster: Transcriptional regulator; n=3; Vibrio|... 33 6.4
UniRef50_A3QH26 Cluster: Transcriptional regulator, LysR family;... 33 6.4
UniRef50_A6SHP4 Cluster: Putative uncharacterized protein; n=2; ... 33 6.4
UniRef50_Q0VAA5 Cluster: Phosphatidylinositol-specific phospholi... 33 6.4
UniRef50_UPI00006DC123 Cluster: COG0583: Transcriptional regulat... 33 8.4
UniRef50_Q5LL50 Cluster: Hydrogen peroxide-inducible genes activ... 33 8.4
UniRef50_Q4KGL9 Cluster: Transcriptional regulator, LysR family;... 33 8.4
UniRef50_Q39CB8 Cluster: Transcriptional regulator, LysR family;... 33 8.4
UniRef50_Q8KN32 Cluster: Putative LysR type transcriptional regu... 33 8.4
UniRef50_Q3DZ59 Cluster: Regulatory protein, LysR:LysR, substrat... 33 8.4
UniRef50_Q11F92 Cluster: Transcriptional regulator, LysR family;... 33 8.4
UniRef50_Q0LXJ2 Cluster: Regulatory protein, LysR:LysR, substrat... 33 8.4
UniRef50_Q0KDP4 Cluster: Transcriptional regulator, LysR-family;... 33 8.4
UniRef50_Q0JY95 Cluster: Transcriptional regulator, LysR-family;... 33 8.4
UniRef50_A7JRS0 Cluster: Possible LysR family transcriptional re... 33 8.4
UniRef50_A6VRB0 Cluster: Transcriptional regulator, LysR family;... 33 8.4
UniRef50_A5W6Q9 Cluster: Transcriptional regulator, LysR family;... 33 8.4
UniRef50_A4CAQ3 Cluster: Putative transcriptional regulator of t... 33 8.4
UniRef50_A0AWD6 Cluster: Transcriptional regulator, LysR family;... 33 8.4
>UniRef50_P30979 Cluster: Uncharacterized HTH-type transcriptional
regulator ybeF; n=23; Enterobacteriaceae|Rep:
Uncharacterized HTH-type transcriptional regulator ybeF
- Escherichia coli (strain K12)
Length = 317
Score = 323 bits (793), Expect = 3e-87
Identities = 157/170 (92%), Positives = 158/170 (92%), Gaps = 1/170 (0%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT
Sbjct: 116 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT 175
Query: 327 NRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
NRTVQHHVLFTDNMVLICREGNP L L E + AHVLLLPEEQNFSGLRQRVQEMF
Sbjct: 176 NRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMF 235
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFPSL 1
PDRQINFTSYNILTIAALVANSDMLAIIP FYNLFSRCWPLEKLPFPSL
Sbjct: 236 PDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSL 285
Score = 118 bits (283), Expect = 2e-25
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD
Sbjct: 59 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 114
>UniRef50_Q32IV1 Cluster: Putative transcriptional regulator
LYSR-type; n=1; Shigella dysenteriae Sd197|Rep: Putative
transcriptional regulator LYSR-type - Shigella
dysenteriae serotype 1 (strain Sd197)
Length = 311
Score = 238 bits (582), Expect(2) = 8e-82
Identities = 116/134 (86%), Positives = 120/134 (89%), Gaps = 1/134 (0%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT
Sbjct: 65 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT 124
Query: 327 NRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
NRTVQHHVLFTDNMVLICREGNP L L E + AHVLLLPE QNFSGLRQR+QEMF
Sbjct: 125 NRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEGQNFSGLRQRIQEMF 184
Query: 150 PDRQINFTSYNILT 109
PDRQI+FTS+ T
Sbjct: 185 PDRQISFTSFTSYT 198
Score = 115 bits (277), Expect = 9e-25
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDI GSYD
Sbjct: 8 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIAGSYD 63
Score = 89.0 bits (211), Expect(2) = 8e-82
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = -1
Query: 135 NFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFPSL 1
++ SYNILTIAALVANSDMLAIIP FYNLFSRCWPLEKLPFPSL
Sbjct: 235 SYNSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSL 279
>UniRef50_A6T690 Cluster: Putative transcriptional regulator (LysR
family) or putative periplasmic binding protein; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative transcriptional regulator (LysR family) or
putative periplasmic binding protein - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 298
Score = 147 bits (355), Expect = 3e-34
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
QR ITIATTP++GAL++P + A+K +PQ+LL N I DA QL Q Q DL+ID +
Sbjct: 95 QRVITIATTPAMGALLMPGLASALKPTFPQILLHNIAIVDAARQLDQRQVDLLIDTHLHS 154
Query: 327 NRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
+ + HHVL+ D + + CR G+P L + L+ LLLPE Q + L +R+QE
Sbjct: 155 GQAISHHVLYQDRVQMYCRAGHPALDGPQDETTLAEYEFALLLPEGQRYPTLHRRLQEEM 214
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFPSL 1
+R+ F+++N++T AA++A SDML + + + + SR WPL+ L FPSL
Sbjct: 215 GERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLWPLQTLDFPSL 264
Score = 93.5 bits (222), Expect = 4e-18
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGS 516
AISQSI KLR +FPDPLFIRKGQGVTPTA+A HLH+YIS+G+E+ L ALDI GS
Sbjct: 38 AISQSINKLRALFPDPLFIRKGQGVTPTAYATHLHQYISRGMEAFLSALDITGS 91
>UniRef50_Q8FJZ5 Cluster: Putative uncharacterized protein; n=2;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli O6
Length = 113
Score = 108 bits (259), Expect = 1e-22
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = -1
Query: 480 PSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
PSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLI DNMFCT
Sbjct: 61 PSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLITDNMFCT 111
>UniRef50_A1A8Q4 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli APEC O1|Rep: Putative uncharacterized
protein - Escherichia coli O1:K1 / APEC
Length = 113
Score = 97.9 bits (233), Expect = 2e-19
Identities = 47/55 (85%), Positives = 47/55 (85%)
Frame = -2
Query: 479 PRSEHWSFLSSIGRLKLTIRSFYCATRPSATRKTNSVSFKPIS*SITCFAPIVRC 315
PRSE WSFLSSIGRLKLTI SFYCATRPSA RKTNSVSFKPIS ITCFA RC
Sbjct: 57 PRSEPWSFLSSIGRLKLTIHSFYCATRPSAARKTNSVSFKPISSPITCFAQDHRC 111
>UniRef50_Q9XB48 Cluster: ORF 3; n=1; Escherichia coli|Rep: ORF 3 -
Escherichia coli
Length = 86
Score = 74.5 bits (175), Expect = 2e-12
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3
Query: 579 MHRKCGRSYTLAFANKQWVREYNAQFLNRLTDC 677
MHRKCGRS TLAFANKQWVREYNAQFLNRLTDC
Sbjct: 1 MHRKCGRSDTLAFANKQWVREYNAQFLNRLTDC 33
>UniRef50_Q87IC4 Cluster: Putaive transcriptional regulator, LysR
family; n=10; Gammaproteobacteria|Rep: Putaive
transcriptional regulator, LysR family - Vibrio
parahaemolyticus
Length = 289
Score = 60.1 bits (139), Expect = 5e-08
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = -1
Query: 375 LSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLP 199
L Q + DL+ID + + + + V+ICRE +P ++ E+ H L
Sbjct: 123 LRQQKVDLVIDTVVTKDAAFVMEEAYEEKAVIICREQHPRIQGTLSKEQFYDETHCLFSG 182
Query: 198 EEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEK 19
+ N SG Q QE +R+++ + ++ +A VA D L ++ Q F N +S+ L+
Sbjct: 183 KWNNMSGFEQLAQETILERKVDLVTSSLAGMALYVAQRDCLGLVSQSFANKWSKALKLQV 242
Query: 18 LPFP 7
LP P
Sbjct: 243 LPCP 246
Score = 33.5 bits (73), Expect = 4.8
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S +I++L + LF++KG+G+T T+ A L Q + I A+
Sbjct: 35 AVSAAIKRLEQVVDKQLFVKKGRGITLTSAAYQLLPQFEQAVSIIDNAI 83
>UniRef50_Q9KTV6 Cluster: Transcriptional regulator, LysR family;
n=15; Vibrio cholerae|Rep: Transcriptional regulator,
LysR family - Vibrio cholerae
Length = 308
Score = 58.0 bits (134), Expect = 2e-07
Identities = 22/56 (39%), Positives = 42/56 (75%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+SQ++ +LR DPLFIR+G+G+ PT +A+++H+++++GL +I L+ + +D
Sbjct: 37 AVSQNLSRLREQVGDPLFIRQGRGLQPTQYALNMHKHVAEGLSAIRFGLETDAGFD 92
>UniRef50_A0WZD3 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella pealeana ATCC 700345|Rep:
Transcriptional regulator, LysR family - Shewanella
pealeana ATCC 700345
Length = 305
Score = 55.6 bits (128), Expect = 1e-06
Identities = 39/171 (22%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQ--LSQFQTDLIIDNMF 334
+RT + + S L+ ++ + ++ L+ R PP+ + E Q L + DL +D
Sbjct: 97 ERTFYVYASESAILLLQGIVEQFLEELSINLVFREPPLIEEELQMDLQLEKVDLALDIWL 156
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQE 157
+ + + + D +V + R+G+P +T E+ H++ N S ++
Sbjct: 157 PESSSFKSQKVMQDKLVCVARKGHPRISGAITQEQYFNEKHIIFKMRRDNLSVADLLTKQ 216
Query: 156 MFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLE--KLPF 10
+ P R+++ +IL++ AL + SD LAI+ + + + +++ + L+ +LPF
Sbjct: 217 VLPARKMHSEQSSILSMMALASKSDALAIVSKSYTDEYAQLFGLQVFELPF 267
Score = 39.5 bits (88), Expect = 0.074
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
++S +I +L++ + LFIR G+GV PTA AM+L++ ++ + I
Sbjct: 37 SVSNAITRLKLAVGEELFIRVGRGVKPTASAMNLYQQLASPVSEI 81
>UniRef50_A6T413 Cluster: Transcriptional regulator, LysR family;
n=1; Janthinobacterium sp. Marseille|Rep:
Transcriptional regulator, LysR family -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 302
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR+IF DPLF+R QG+ PT +A L E +S+ E I AL I +D
Sbjct: 36 AMSNALARLRIIFNDPLFVRTSQGMQPTPYAEQLIEPVSRACELITSALQINSVFD 91
Score = 39.9 bits (89), Expect = 0.056
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQ--LLLRNPPISDAENQLSQFQTDLIIDNMFC 331
+T + T L+LP + + I+ P + +R P A+ ++ + DL +
Sbjct: 97 KTFSFYMTEIGEILLLPKLLKHIQVAAPNACVRVRRIPEQGAKEAMANGEIDLAVGLFPY 156
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRV-QE 157
L+TD I R+G+P +T ++ T HV+++ +++
Sbjct: 157 LKAGFYQQRLYTDKFACIVRQGHPTVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLT 216
Query: 156 MFPDRQINFTSYNILTIAALVANSDMLAIIP 64
R+I TS N L + ++ +D +A IP
Sbjct: 217 EHLRRKIVMTSQNFLVLPMIIEQTDAIATIP 247
>UniRef50_P77746 Cluster: Uncharacterized HTH-type transcriptional
regulator ybdO; n=16; Enterobacteriaceae|Rep:
Uncharacterized HTH-type transcriptional regulator ybdO
- Escherichia coli (strain K12)
Length = 300
Score = 54.4 bits (125), Expect = 2e-06
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDI 525
A+SQS+Q+LR F DPLFIR G+G+ PT ++LH ++ + L + ++I
Sbjct: 40 AVSQSLQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINI 90
Score = 53.2 bits (122), Expect = 6e-06
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Frame = -1
Query: 390 DAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAH 214
+AE L + DL+I M +R+V L T LIC +P T E++
Sbjct: 139 NAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEF 198
Query: 213 VLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRC 34
L+ + ++ + E F +R+I+F ++LTI +A +D+L I+P YN +
Sbjct: 199 TQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDF 258
Query: 33 WPLEKL----PFPSL 1
L+++ P PS+
Sbjct: 259 LNLKEIKLEHPLPSI 273
>UniRef50_A6T677 Cluster: Putative transcriptional regulator; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative transcriptional regulator - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 310
Score = 54.0 bits (124), Expect = 3e-06
Identities = 23/60 (38%), Positives = 39/60 (65%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER 498
A+SQS+Q+LR DPLF+R G+G+TPT ++LH ++ Q LE + +++ + +R
Sbjct: 40 AVSQSLQRLRQQLNDPLFVRVGKGMTPTTACVNLHYHLQQNLEQLEKTINLNNRSELRKR 99
Score = 39.5 bits (88), Expect = 0.074
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 1/130 (0%)
Frame = -1
Query: 387 AENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHV 211
AE L+ Q DL+ M TNR T + +CR G+P E L+
Sbjct: 139 AEELLAYRQADLVFTRMPITNRATICQPYQTVQTLAVCRAGHPRRETLTSVESLAQEFFT 198
Query: 210 LLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCW 31
+ + ++Q R I F S + +TI ++ +D++ +P Y+ S
Sbjct: 199 HYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKTDLIGFLPSYLYDFISPTM 258
Query: 30 PLEKLPFPSL 1
L + +L
Sbjct: 259 QLHAINIDNL 268
>UniRef50_Q47ZN8 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 312
Score = 53.6 bits (123), Expect = 4e-06
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Frame = -1
Query: 390 DAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*KMTERLS---TT 220
DAE L + DL +D + H LF D + +I R+G+P K LS
Sbjct: 139 DAEKSLRDKEYDLHLDYLTIDEIGCHHQELFNDQLFIIARKGHPNLNNKTNLLLSEYLAE 198
Query: 219 AHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIP----QPFY 52
H +L P + N L +Q+ +R+I +TS +I I +V+ +D++ I+P Q +
Sbjct: 199 KHAVLAPRKGNVYPLSLALQDFSYNREIKYTSTSIENILEIVSATDLICIMPGTVLQSMH 258
Query: 51 NLFSRCW 31
N+ W
Sbjct: 259 NVNDYIW 265
Score = 37.5 bits (83), Expect = 0.30
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
A+SQ++++LR ++ DPLF RK + PT A ++ I++ L + L G +
Sbjct: 38 AVSQALKRLRSLYNDPLFERKSGKMMPTLKADEIYPIINKILADVSSTLPDTGDF 92
>UniRef50_Q3ZUZ6 Cluster: Putative uncharacterized protein; n=2;
Enterobacter sakazakii|Rep: Putative uncharacterized
protein - Enterobacter sakazakii
Length = 320
Score = 53.6 bits (123), Expect = 4e-06
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDI 525
AISQS+Q+LR DPLF+R G+G+TPT +LH Y+ L + ++I
Sbjct: 40 AISQSLQRLRNQLNDPLFVRSGKGITPTTVGTNLHHYLEDNLNQLEQTINI 90
Score = 49.2 bits (112), Expect = 9e-05
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYP-QLLLRNPPISD--AENQLSQFQTDLIIDNM 337
++ + P++ A LP + A + HY +L + ++ E+ L+ + DLII
Sbjct: 97 RKNFVLYCPPALAADHLPALVSAFREHYDFELEHYDTTLASETVEDLLAYRKADLIIGMA 156
Query: 336 FCTNRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQ 160
+ ++ F++ VL+C E +P L L+ L + +
Sbjct: 157 PVASHSLICKHCFSEETVLVCSENHPRLDEHADEAALAQEKFTLFNGTAEGQKQFHVKSA 216
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPL 25
E+F +RQI FTS +I +I A++ ++D + I+P P + + + L
Sbjct: 217 ELFGERQIAFTSNSISSIMAVIGSTDFVGILPAPVLRRYRQLFGL 261
>UniRef50_A6CXP0 Cluster: Transcriptional regulator, LysR family
protein; n=1; Vibrio shilonii AK1|Rep: Transcriptional
regulator, LysR family protein - Vibrio shilonii AK1
Length = 310
Score = 53.6 bits (123), Expect = 4e-06
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Frame = -1
Query: 432 THYP--QLLLRNPPISDAE--NQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREG 265
T YP +++L+ P DA L + DL+ID ++ Q +L ++ + + +
Sbjct: 127 TTYPNIEIILKELPPKDARIYEDLQMEKVDLVIDVSPSDSKVFQSELLHSEGLTCVASKN 186
Query: 264 NP-LPL*KMTE-RLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVA 91
+P + K + T +HVLL N + + V E+ P R++ ++L + V+
Sbjct: 187 HPRIQQGKFDKSNYMTESHVLLNIRRHNLTFVEWLVSEVLPPRKVFSQHSSLLGMLPSVS 246
Query: 90 NSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
NS +A+IP +S + L+ PFP
Sbjct: 247 NSQAIAVIPLSVAEQYSDIFQLQTFPFP 274
>UniRef50_Q629U6 Cluster: Transcriptional regulator, LysR family;
n=21; cellular organisms|Rep: Transcriptional regulator,
LysR family - Burkholderia mallei (Pseudomonas mallei)
Length = 311
Score = 53.2 bits (122), Expect = 6e-06
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Frame = -1
Query: 465 LVLPVIYRAIKTHYPQLLL--RNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTD 292
++LP + IK+ P ++L ++ QL+ DL ID + N + + L +
Sbjct: 111 VLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEE 170
Query: 291 NMVLICREGNPLPL*KMTER-LSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNI 115
++V+I R G+P + R + HV + P ++ S L + R ++ +
Sbjct: 171 HLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHY 230
Query: 114 LTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
LTI ALVA SD+L IP+ F+ + L+ P P
Sbjct: 231 LTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLP 266
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGL 552
A+S ++ +LR +PLF R +G+TPTA A L+E + Q L
Sbjct: 38 AVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQAL 79
>UniRef50_A6EYC4 Cluster: LysR family regulatory protein; n=1;
Marinobacter algicola DG893|Rep: LysR family regulatory
protein - Marinobacter algicola DG893
Length = 300
Score = 52.4 bits (120), Expect = 1e-05
Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQ-LSQFQTDLIIDNMFC 331
QR + + +VLP + +++ P +++ D Q L + DL +D
Sbjct: 98 QRRFRVLSNDYFEMVVLPTLLTRLRSEAPNVVVEVALAGDDMPQRLYTAEADLAVDAFAT 157
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
N ++ VL + + ++ R+ +P +++ A ++LP+ L Q + E
Sbjct: 158 ENDRLRRQVLLAERLAVVARKDHPDLWDDCSKQQFLDAEHVVLPDRNRRLPLDQILNEPG 217
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R+ ++ A + SDM+A +P+ ++R + L+ LPFP
Sbjct: 218 WQRRTGARVTQFASMLATCSRSDMIATVPERLAQQYARAFGLKTLPFP 265
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
AIS ++Q+LR DPLF+R QG+ PT A LH +SQ L ++ LD
Sbjct: 38 AISAALQRLRHTLGDPLFVRTHQGMVPTPRARELHRSLSQQLGAMRDTLD 87
>UniRef50_Q8D593 Cluster: Transcriptional regulator; n=4;
Vibrionaceae|Rep: Transcriptional regulator - Vibrio
vulnificus
Length = 301
Score = 51.6 bits (118), Expect = 2e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESIL 540
A+S ++ +LR + DPLFIR+G+G+TPT FA+ LH I + L +L
Sbjct: 33 AVSHALNRLREQYQDPLFIRQGRGITPTNFAIELHAEIQEPLSLLL 78
Score = 41.9 bits (94), Expect = 0.014
Identities = 33/171 (19%), Positives = 73/171 (42%), Gaps = 5/171 (2%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLL----RNPPISDAENQLSQFQTDLIIDNM 337
RT +++ + ++LP + + H P + L + D + L + D+I+ +
Sbjct: 94 RTFRLSSHKDIDLMLLPPLMDHLAQHAPNVKLCADVEHLDERDRQADLRTRKVDMILATV 153
Query: 336 FCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQ 160
+ +LF +V++CR+ +P +T ++ H+L + QN +
Sbjct: 154 PFDEHGYHNELLFELPLVMVCRQDHPRIQNTITHQQFFAEQHLLWETKRQNQDIVDSLAL 213
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
E P R I + + + + A +D + + Q +L ++ L+ +P P
Sbjct: 214 EPQPQRNIAYKTGSSCNAIMMAAQTDWICVTGQWHADLMAKAHQLQVMPLP 264
>UniRef50_A6AQH2 Cluster: Transcriptional regulator, LysR family;
n=1; Vibrio harveyi HY01|Rep: Transcriptional regulator,
LysR family - Vibrio harveyi HY01
Length = 307
Score = 51.2 bits (117), Expect = 2e-05
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+SQS+ +LR +F D LF+R+ GV+PTAFA+ ++ ++ +ESI
Sbjct: 34 AVSQSVVRLREVFKDALFVRESHGVSPTAFAIDIYPTLASAVESI 78
Score = 44.0 bits (99), Expect = 0.003
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Frame = -1
Query: 462 VLPVIYRAIKTHYPQLLLRNPPI--SDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDN 289
+LP + + P+ R P+ D + L Q DL+I+ + ++ VL +D
Sbjct: 109 LLPELAALLSEKAPKANTRIEPLFTMDLTSLLRTQQCDLVIEAQTNLHPHLRSKVLMSDK 168
Query: 288 MVLICREGNPLPL*KM--TERLSTTAHVLLLPEEQNFSGLRQRV---QEMFPDRQINFTS 124
+ ++CR+ +P K E HV L +Q L R +++ RQ+ + +
Sbjct: 169 LTVVCRKEHPRLKGKTISVEEYLNEKHVTLSQFDQKNGYLLGRGIKNEQILGQRQVAWQA 228
Query: 123 YNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKL 16
+I+ I L+ D LA++PQ + + + L +L
Sbjct: 229 GSIIEILPLIQRCDYLALMPQTLLEQYRKLYNLREL 264
>UniRef50_Q89IY7 Cluster: Transcriptional regulatory protein; n=1;
Bradyrhizobium japonicum|Rep: Transcriptional regulatory
protein - Bradyrhizobium japonicum
Length = 307
Score = 50.8 bits (116), Expect = 3e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S ++ +LR DPLF+R G G+ PT A+ L E I + LES+ GALD
Sbjct: 38 AVSNALARLRDALGDPLFVRSGTGIRPTQRAVVLWEPIGEALESVRGALD 87
>UniRef50_Q5LKP3 Cluster: Transcriptional regulator, LysR family;
n=1; Silicibacter pomeroyi|Rep: Transcriptional
regulator, LysR family - Silicibacter pomeroyi
Length = 324
Score = 50.4 bits (115), Expect = 4e-05
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 4/171 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISD---AENQLSQFQTDLIIDNM 337
+R I + +++P + RA++ Y + L P+ D AE L+ DL +
Sbjct: 96 RRNFRIVVLDMLEPILMPPLVRAVQD-YRSVTLEMLPVMDFPIAEG-LNDGSLDLALTTF 153
Query: 336 FCTNRTVQHHVLFTDNMVLICREGNPLPL*KMTERL-STTAHVLLLPEEQNFSGLRQRVQ 160
+ ++ + +V++ R+G+P +MT L S HV L+P+ + S + + ++
Sbjct: 154 DPQHGDIECEQVGAAKIVIVARKGHPRIKGEMTPALVSEIGHVALIPKIRALSRVDEVLR 213
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
DR I + + ++ANSD++A++P F + +PL+ P P
Sbjct: 214 YAKIDRHIVYMVTRFWSFPHILANSDLIAMMPGDFAAHAALFYPLDIFPVP 264
Score = 35.9 bits (79), Expect = 0.91
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
IS ++ +LR DPLFIR G+GV PT A + + L+ I + +D
Sbjct: 37 ISNALARLRDTVGDPLFIRSGRGVAPTPRATGMIGPVRDALQMIQSGFGDDERFD 91
>UniRef50_Q1MK05 Cluster: Putative LysR family transcriptional
regulator; n=1; Rhizobium leguminosarum bv. viciae
3841|Rep: Putative LysR family transcriptional regulator
- Rhizobium leguminosarum bv. viciae (strain 3841)
Length = 310
Score = 50.4 bits (115), Expect = 4e-05
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 5/171 (2%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISD--AENQLSQFQTDLIIDNMF- 334
R TIA V +++PVI ++ P + LR P + AE T++++ +
Sbjct: 94 RQFTIAPNSYVEFVLMPVIVARLRECAPGIRLRLTPFGNDLAETGAISGATEMVLGRIVE 153
Query: 333 -CTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQ 160
N VQH L D + + R+ +P ++ ER HV +LP + GL Q +Q
Sbjct: 154 PPDNMVVQH--LMDDGLACVVRKDHPEITESISEERYQRMRHVNVLPPGRMRVGLFQMLQ 211
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
+ R ++ + + L + +VA +D A +P+ + +R L+ LP P
Sbjct: 212 QAGLRRDVSVSVTHFLAVPEMVAVTDYCATLPRLICHRLARDPRLKILPAP 262
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++ +LR DPLFIR+ G+ PT A L I L S+
Sbjct: 33 AVSNALNRLRETLRDPLFIRERYGMKPTEMAEALAPVIRGALASL 77
>UniRef50_Q9I0Z0 Cluster: Transcriptional regulator MexT; n=28;
Pseudomonadaceae|Rep: Transcriptional regulator MexT -
Pseudomonas aeruginosa
Length = 347
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AIS ++ +LR +F DPLF+R G+ + PTA A + ++S L+SI A+ +D
Sbjct: 82 AISAALSRLRTLFDDPLFVRTGRSMEPTARAQEIFAHLSPALDSISTAMSRASEFD 137
>UniRef50_Q5LVV7 Cluster: Transcriptional regulator, LysR family;
n=1; Silicibacter pomeroyi|Rep: Transcriptional
regulator, LysR family - Silicibacter pomeroyi
Length = 303
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S ++ KLR + DPLF+R GQG+TPT A+ L E + + L+ I D
Sbjct: 39 AVSHTLAKLRAVLGDPLFVRSGQGLTPTERALSLREPVQRVLDGIKSLTD 88
>UniRef50_P10183 Cluster: HTH-type transcriptional activator nahR;
n=6; root|Rep: HTH-type transcriptional activator nahR -
Pseudomonas putida
Length = 300
Score = 50.0 bits (114), Expect = 5e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++++LR DPLF+R QG+ PT +A HL E ++ + ++ AL S+D
Sbjct: 36 AVSNALKRLRTSLQDPLFVRTHQGMEPTPYAAHLAEPVTSAMHALRNALQHHESFD 91
>UniRef50_A0X0Y3 Cluster: Transcriptional regulator, LysR family;
n=3; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Shewanella pealeana ATCC 700345
Length = 304
Score = 48.8 bits (111), Expect = 1e-04
Identities = 31/141 (21%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Frame = -1
Query: 420 QLLLRNPPISDAE--NQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL* 247
+++ + PPI + QLS + DL ID + + + + + +++ +ICR+G+P
Sbjct: 127 EIMFQLPPIEEERLLQQLSLQKADLAIDVGQLPSLSYSNQLFYRESVTMICRKGHPRING 186
Query: 246 KMTE-RLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAI 70
K+ + + H+ L + L +E+ +R+++ +++L++ ALV+ SD +AI
Sbjct: 187 KIGKIQFYQEKHITLQIRRATLTALDFFTEEVIGERKVSCECHSLLSMMALVSESDCIAI 246
Query: 69 IPQPFYNLFSRCWPLEKLPFP 7
+ + ++ + L+ + P
Sbjct: 247 TSRSIADKYADKFGLQSIEPP 267
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S ++++L+ LF+R+G+G++PT A+ L +S ++ AL +D
Sbjct: 40 VSAALKRLQATLGVELFVREGRGISPTNAAIQLASQVSPAYNTVNSALSNVAGFD 94
>UniRef50_Q1YUH5 Cluster: Nodulation protein d1; n=1; gamma
proteobacterium HTCC2207|Rep: Nodulation protein d1 -
gamma proteobacterium HTCC2207
Length = 306
Score = 48.0 bits (109), Expect = 2e-04
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQL-SQFQTDLIIDNMFCT 328
R TI + + ++ + R ++ P + L P +D+ ++L SQ DL+I
Sbjct: 97 RKFTITASDYLAQVIFVPLIRHLRNVAPNIQLEIVPPADSTHELLSQGSIDLVILPEQMI 156
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMTER-LSTTAHVLL-LPEEQNFSGLRQRVQEM 154
+ +LF D V++ + NP MTE T+ HV++ L + S Q+++
Sbjct: 157 SDEFPSELLFEDRFVIVGCQSNPAFQQAMTEEAFYTSGHVVVKLGSRRPISVSDQQLESR 216
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R + + L +V +D L ++ + N+F+ P+ P P
Sbjct: 217 KKSRDTDILVGSFLLAPEMVVGTDRLTVMHERLANIFATRVPIVTAPLP 265
>UniRef50_Q081Z6 Cluster: Transcriptional regulator, LysR family
protein; n=1; Shewanella frigidimarina NCIMB 400|Rep:
Transcriptional regulator, LysR family protein -
Shewanella frigidimarina (strain NCIMB 400)
Length = 303
Score = 47.6 bits (108), Expect = 3e-04
Identities = 36/172 (20%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQL-LLRNPPI--SDAENQLSQFQTDLIIDNM 337
+++ +++ S+ LP++ +++ P + L N + ++ EN+L+ DL ID +
Sbjct: 93 RKSFSLSLHGSLEPYYLPILQQSLSLESPSINLSSNKRVRRTELENKLASGDIDLAIDTL 152
Query: 336 FCTNRTVQHHVLFTDNMVLICREGNPL--PL*KMTERLSTTAHVLLLPEEQNFSGLRQRV 163
+ + H L D +V++ R+ +P P + L HVL+ S +
Sbjct: 153 IPVSNNIMHTQLELDQLVVVARKNHPAMNPDLDLATYLKLD-HVLVSSRSTGPSLEDFEL 211
Query: 162 QEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
+ R+I+ + L+ ++ N+DML +P+ ++S+ ++ P P
Sbjct: 212 SRIGLHRKISLRCQHALSACRVILNNDMLLTLPKTAAAMYSKMLDIDIHPMP 263
Score = 36.7 bits (81), Expect = 0.52
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S S+ KLR F D LFIR+G + PT A ++ + + + L +
Sbjct: 33 AVSHSLGKLRTHFDDALFIRQGNEMRPTPVAKNVIDDVREALHQL 77
>UniRef50_P52679 Cluster: PCP degradation transcriptional activation
protein; n=1; Sphingobium chlorophenolicum|Rep: PCP
degradation transcriptional activation protein -
Sphingobium chlorophenolicum
Length = 307
Score = 47.2 bits (107), Expect = 4e-04
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 8/174 (4%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLL-----LRNPPISDAENQLSQFQTDLIIDN 340
R IA + AL+LP +Y ++ PQ+ LR+ P+ + +L D+
Sbjct: 97 RNFRIAASDFGQALMLPRLYATLEETAPQVRVTGVNLRHGPLVE---ELESGSIDIAFGG 153
Query: 339 MFCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNF--SGLRQ 169
+ ++ LF + V + R+ +P + E H+++ E N +
Sbjct: 154 FPTLSAGIKTQTLFREEYVCVMRQSHPALTHGLDLEAFRQCRHIIVTAHEFNHVHEQVEA 213
Query: 168 RVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R+ E+ P I FT+ N L A + +D++ IP F+ L P P
Sbjct: 214 RLLELLPPESIRFTTENFLVSAVIAEETDVILTIPSRLARWFANRGGLTIFPVP 267
>UniRef50_Q3S4D5 Cluster: LysR-like regular protein; n=1;
Polaromonas naphthalenivorans CJ2|Rep: LysR-like regular
protein - Polaromonas naphthalenivorans (strain CJ2)
Length = 301
Score = 46.8 bits (106), Expect = 5e-04
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++++LR + D LF+R +G+ PT +A+HL E + L ++ A S+D
Sbjct: 36 AVSNALKRLRAVLKDELFLRTSRGMEPTPYALHLAEPVIYALNALQTAFTTRNSFD 91
>UniRef50_Q1MWN1 Cluster: LysR-type regulatory protein; n=1;
Sphingomonas sp. A4|Rep: LysR-type regulatory protein -
Sphingomonas sp. A4
Length = 302
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S +++KLR + D LF+R G+ PT +AM L E IS L+++ A++ S+D
Sbjct: 37 AVSNALKKLRELLNDELFVRTRSGMIPTQYAMQLAEPISYALKTLEIAIEASESFD 92
Score = 33.9 bits (74), Expect = 3.7
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -1
Query: 303 LFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFT 127
LF ++ R+ +P+ K E L + + E + + + ++ DR I
Sbjct: 167 LFYQGWRILARKDHPIFSSKAPREDLLACRWIGVRSEGSGSASVNAELLKVGMDRNIVVW 226
Query: 126 SYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
+ N T+A L+A D+ A +P+ + + + L+ +PFP
Sbjct: 227 TSNFGTLAPLLAVGDLAACVPEIYTTVIDEAFGLKSMPFP 266
>UniRef50_Q11CG0 Cluster: Transcriptional regulator, LysR family;
n=1; Mesorhizobium sp. BNC1|Rep: Transcriptional
regulator, LysR family - Mesorhizobium sp. (strain BNC1)
Length = 304
Score = 46.8 bits (106), Expect = 5e-04
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
TI +A T + L + + P QL +R P + L + + D ++
Sbjct: 98 TIRLAATGYTENVFLARVMSEVAVRAPGVQLEIRPPDRLHDTSALEKGEVDFLVGWNVTP 157
Query: 327 NRTVQHHVLFTDNMVLICREGNP-LPL*KMT-ERLSTTAHVLLLPEEQNFSGL--RQRVQ 160
++ VLFTD +V I R G+P L ++ ER HV + + L +R+
Sbjct: 158 APVLRSRVLFTDELVCIARAGHPALEDGNLSYERYVALPHVQFDTPSKTTTELLLHERLA 217
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPF 55
+ + F N+LT+A +VANSD++A + + F
Sbjct: 218 QRGDRPFVQFRVQNLLTVAEIVANSDLIATVSKRF 252
>UniRef50_Q397L7 Cluster: Transcriptional regulator, LysR family;
n=47; Bacteria|Rep: Transcriptional regulator, LysR
family - Burkholderia sp. (strain 383) (Burkholderia
cepacia (strain ATCC 17760/ NCIB 9086 / R18194))
Length = 332
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S ++ KLR DPLF+R GV PT FA+ L E +S L ++ AL+ E +D
Sbjct: 55 VSNALAKLRRRLGDPLFVRGPGGVVPTPFALRLAEPVSHALATLHAALNPETGFD 109
Score = 32.7 bits (71), Expect = 8.4
Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAE--NQLSQFQTDLIIDNMFC 331
RT+TI T + LP + + P + L + ++++ + DL I +
Sbjct: 115 RTLTIGMTDIGEVVFLPALLEHLSQAAPGIALNTVRDTSVNLSDEMADGRVDLAIGLLPQ 174
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEM 154
LF V + R G+PL +T + H++++ + + ++
Sbjct: 175 LKGGFYQRRLFDQRYVCLFRRGHPLEDAPLTVDAWRDAEHLVVVSAGTGHGQVDEWLKRR 234
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQ 61
RQ+ T + +++ ++ +D++A +P+
Sbjct: 235 RVARQVRLTVPHFMSVGYILQRTDLIATVPE 265
>UniRef50_Q0BYJ0 Cluster: Transcriptional regulator, LysR family;
n=1; Hyphomonas neptunium ATCC 15444|Rep:
Transcriptional regulator, LysR family - Hyphomonas
neptunium (strain ATCC 15444)
Length = 297
Score = 46.0 bits (104), Expect = 8e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S ++ +LR+ F DPLF+R+G+GV PTA L I + L+ + L+
Sbjct: 36 AVSNALSRLRLHFEDPLFVREGRGVKPTAMTEALMPAIRESLDKLRNGLE 85
>UniRef50_Q6LJ04 Cluster: Hypothetical transcriptional regulator;
n=5; Vibrionales|Rep: Hypothetical transcriptional
regulator - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 296
Score = 45.6 bits (103), Expect = 0.001
Identities = 36/169 (21%), Positives = 78/169 (46%), Gaps = 3/169 (1%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAE--NQLSQFQTDLIIDNMFC 331
R T+ ++ +V P I + L P ++ E +QLS + +L ID +
Sbjct: 95 RVFTVYVNEAMMHIVRPKIEADESMGNCSIQLHLTPNNEDELFHQLSLHKAELAIDFGYL 154
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEM 154
+N + + + D V++CR+ +P +T E+ VL+ + +E
Sbjct: 155 SNPSYSYDAFYDDVAVMVCRKDHPNIQNTVTREQFYAEKQVLIQRRRTDLLEANYFTEES 214
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R+++ +++++ ALV++SD + I+ N +++ + L+ +P P
Sbjct: 215 LIPRELSCECASMVSMMALVSDSDSVGIMSGLLANKYAKHFNLQVIPLP 263
Score = 33.1 bits (72), Expect = 6.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S +++L+ LF+RKG+G++PT A+ L I + AL +D
Sbjct: 36 VSGVLKRLQAQLGTALFVRKGRGISPTYAAIQLASEIEPAFTKVESALGNVSGFD 90
>UniRef50_Q12M05 Cluster: LysR, substrate-binding; n=3;
Gammaproteobacteria|Rep: LysR, substrate-binding -
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 /
DSM 15013)
Length = 309
Score = 45.6 bits (103), Expect = 0.001
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 2/171 (1%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS-DAENQLSQFQTDLIIDNMFC 331
+RT IA T L P + R ++ H P++ L P D E L + DL++D
Sbjct: 97 ERTFRIAITDGTSGLFWPALRRHLERHAPKINLHAVPYKLDGEALLVNAEVDLVLDYYEN 156
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSG-LRQRVQEM 154
+ + LF + V + + + L +T A LL+ + SG + +++ ++
Sbjct: 157 RHPQILSQHLFDNQFVCVMAKAHALSEKTLTLDDFAAAEHLLVSLSGDASGTVDRKLAQL 216
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFPSL 1
R+I T + + L+ S +++ +P Y++ + L+KL +L
Sbjct: 217 GHSRRIAMTVNSFASAKTLIEESRLISTLP---YSIIASWQSLDKLTVKTL 264
Score = 43.2 bits (97), Expect = 0.006
Identities = 17/49 (34%), Positives = 34/49 (69%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
++S ++ ++R + DPLFI++G+G+ P+ FA+ L + ++ LE I A+
Sbjct: 38 SVSNAVARMRHNWKDPLFIKQGRGIKPSPFALALWQQVASPLEQIRSAV 86
>UniRef50_A6W1I8 Cluster: Transcriptional regulator, LysR family;
n=2; Marinomonas|Rep: Transcriptional regulator, LysR
family - Marinomonas sp. MWYL1
Length = 326
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S+S+Q+LR +F D LF R+ G++PTA A LH+ I L S+
Sbjct: 39 ALSKSLQRLRELFKDSLFTRQAYGLSPTARASELHDLIQPILNSL 83
>UniRef50_A5FEQ6 Cluster: Transcriptional regulator, LysR family;
n=1; Flavobacterium johnsoniae UW101|Rep:
Transcriptional regulator, LysR family - Flavobacterium
johnsoniae UW101
Length = 287
Score = 45.6 bits (103), Expect = 0.001
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQ--LSQFQTDLIIDNMFCT 328
T+TI+ S+ A ++P I I +P+L ++ + Q L ++ DL I
Sbjct: 92 TLTISHPDSISASIMPDILSRISDAFPKLKIKLVQVLYENQQEFLRNYKIDLAITRDINH 151
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLP---EEQNFSGLRQRVQE 157
R ++ ++TDN+ ++ E +P + + S +LP E ++S L QR+
Sbjct: 152 ARDIKSEKIYTDNLAIVVPENHPYQKPEDLTKESLANQKFILPTTDEGSSYSDLIQRLFN 211
Query: 156 MFPDR-QINFTSYNILTIAALVANSDMLAIIPQPF 55
F + ++ S I ALV +AI+P +
Sbjct: 212 SFENAPEVYLHSEFGSAIIALVRKGLGIAILPDSY 246
>UniRef50_Q12H69 Cluster: Transcriptional regulator, LysR family;
n=8; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 342
Score = 45.2 bits (102), Expect = 0.001
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 1/159 (0%)
Frame = -1
Query: 480 PSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVL 301
P V V+P + T P+ LL A DL QH L
Sbjct: 150 PGVSMRVIP-----LTTRDPRRLLDEQACDLAVGYFPSVLADLTAHAQSGEPMPFQHRRL 204
Query: 300 FTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTS 124
+ V + R+G+PL +T +R H+L+ + + + + + + +RQ+ T
Sbjct: 205 YDGEYVCVMRKGHPLASGPLTLDRFCAARHMLVSFSGRPYGFIDESLASLGRERQVVLTV 264
Query: 123 YNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
T +VANS++L ++P+ F + L P P
Sbjct: 265 NQFFTAGRVVANSNLLTVLPRHFVRVTGIAEQLVLRPLP 303
>UniRef50_A6EW06 Cluster: Transcriptional regulator; n=1;
Marinobacter algicola DG893|Rep: Transcriptional
regulator - Marinobacter algicola DG893
Length = 315
Score = 45.2 bits (102), Expect = 0.001
Identities = 17/49 (34%), Positives = 34/49 (69%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S +I ++R I+ DPLF+RKG+ + PT++A+ L + + + ++ A+
Sbjct: 34 AVSNAISRMRQIWNDPLFVRKGRNIEPTSYALSLWDQVGDPMFALTNAV 82
>UniRef50_A1U796 Cluster: Transcriptional regulator, LysR family;
n=2; Marinobacter|Rep: Transcriptional regulator, LysR
family - Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
(strain DSM 11845))
Length = 303
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++++LR F DPLF++ G+G+ PT +A+ +I Q L+ +
Sbjct: 39 AVSHTLERLRQAFGDPLFVKSGRGIVPTDYALRTGPHIRQLLDDL 83
>UniRef50_A0LD87 Cluster: Transcriptional regulator, LysR family;
n=1; Magnetococcus sp. MC-1|Rep: Transcriptional
regulator, LysR family - Magnetococcus sp. (strain MC-1)
Length = 322
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEG 519
A+S ++++LR +F DPLF++ G + PT A+ L ++ LE + AL+ EG
Sbjct: 43 AMSNTLRRLRELFDDPLFVKTGSSMEPTPRAIELSTPVALALEEVRKALNQEG 95
>UniRef50_Q7WEF9 Cluster: LysR family regulatory protein; n=5;
Burkholderiales|Rep: LysR family regulatory protein -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 314
Score = 44.4 bits (100), Expect = 0.003
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAEN--QLSQFQTDLIIDNMF 334
QR T+ + VG LVLP + + P L + +S + L + DL +
Sbjct: 100 QRQFTLRMSDLVGTLVLPALMARVDAAAPGLAIDTVHLSPEQTIEALEADRLDLAVSMEL 159
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAH--VLLLPEEQNFSGLRQRV 163
++ LF+D MV + R+G+PL ++T ++ H V + P + F
Sbjct: 160 QHTSAIRAEALFSDRMVCVLRKGHPLAGRRLTLKQFLAYRHVRVSMSPTDIRFVDSVLAG 219
Query: 162 QEMFPDRQINFTSYNILTIAALVANSDMLAIIPQ 61
Q + + +N T + L + A++ ++D+LA++ +
Sbjct: 220 QGLRREVALNVTHW--LLVPAVLRDTDLLAVMSE 251
>UniRef50_Q7W2A6 Cluster: Transcriptional regulator; n=3;
Bordetella|Rep: Transcriptional regulator - Bordetella
parapertussis
Length = 313
Score = 44.4 bits (100), Expect = 0.003
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Frame = -1
Query: 492 IATTPSVGALVLPVIYRAIKTHYPQ--LLLRNPPISDAENQLSQFQTDLIIDNMFCTNRT 319
I T V ++LP + R ++ P L L + E L + DL+I ++ N
Sbjct: 101 IGATDYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFP 160
Query: 318 VQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRV-----QEM 154
+ LF D+ V +CR G+P + ++ L +P + +G R+RV Q +
Sbjct: 161 IYRQELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQ---NGARERVLQDTLQRL 217
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R + ++L I A + +D++A + F+ PL+ L P
Sbjct: 218 GVTRDVAVQVPHMLAIPATLTATDLVATMACRVAREFAARHPLQVLAHP 266
Score = 39.9 bits (89), Expect = 0.056
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S+ + +LR F DPLF+R +GV PT A+ + + + Q + ++
Sbjct: 36 AVSKGLAQLRQAFGDPLFLRASRGVVPTHRALEIADQVRQAIAAL 80
>UniRef50_Q39JH6 Cluster: Transcriptional regulator, LysR family;
n=11; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 306
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDI 525
A+S ++ +LRVI+ DPLF+R G+G+ PT A L +S L+ +L I
Sbjct: 39 AVSAALARLRVIYADPLFVRTGRGLAPTPRADELKPILSDALDRCRESLAI 89
>UniRef50_Q486J0 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 306
Score = 44.0 bits (99), Expect = 0.003
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+SQ + +L+ +F D LFIR +GV PT F++ ++ ++ +E+I
Sbjct: 34 AVSQGVTRLQAVFKDTLFIRGSRGVEPTQFSLDIYPTLASSVENI 78
Score = 40.3 bits (90), Expect = 0.042
Identities = 34/172 (19%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS--DAENQLSQFQTDLIIDNMF 334
++ I++ G +LP + + H P ++ P++ D N L DL+ID
Sbjct: 94 EKQFVISSLSVFGFTILPPLSALMSQHAPLASVKIEPLNNHDFTNMLRSQHFDLVIDAHS 153
Query: 333 CTNRTVQHHVLFTDNMVLICR------EGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLR 172
++ V+ D + ++CR G+ + + + T H L + SG
Sbjct: 154 NQYPQLRSKVIMEDTLCVMCRIDHPRLSGDSISIDEFLAEKHVT-HSQLDQKGGYLSGKG 212
Query: 171 QRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKL 16
+ E+ R+I + + +I+ + ++ D +A++PQ + + + L++L
Sbjct: 213 LKEDEILNQRKIAWQAASIMEMLPVIECCDYIALLPQRLVDKYRHIYQLKQL 264
>UniRef50_Q3KA14 Cluster: Transcriptional Regulator, LysR family;
n=18; Pseudomonas|Rep: Transcriptional Regulator, LysR
family - Pseudomonas fluorescens (strain PfO-1)
Length = 314
Score = 44.0 bits (99), Expect = 0.003
Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRN--PPISDAENQLSQFQTDLIIDNMFC 331
+T I+ T A++LP +++ ++ P +++ + + +L+ + D +D
Sbjct: 97 KTYRISMTDLTEAVILPPLFQRLRRLAPTVIIESFLSKRRETTKELAAGRLDFAVDAPLN 156
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*K---MTERLSTTAHVLLLPEEQNFSGLRQRVQ 160
T+ V+H L D V R+G+PL + + + LS T H+ + + +
Sbjct: 157 TDPQVRHVKLMEDRYVCAMRKGHPLATKEKFTLDDYLSLT-HIHISSRRSGLGHVDLALG 215
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPF 55
+M R+I S + L + ++ +DM+ +P+ F
Sbjct: 216 KMGIQRKIALRSQHYLMASQVLQQTDMVMTVPERF 250
Score = 38.3 bits (85), Expect = 0.17
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S ++ +LR F DPLF+R QG+ PT A ++
Sbjct: 36 AVSNALARLRETFNDPLFVRTAQGMVPTPMAQNI 69
>UniRef50_A6U9H6 Cluster: Transcriptional regulator, LysR family;
n=2; Sinorhizobium|Rep: Transcriptional regulator, LysR
family - Sinorhizobium medicae WSM419
Length = 340
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGA 534
A+S ++ +LR +F DPLF+R G G+ PTA A L +S L+++L A
Sbjct: 49 AVSHALARLRTMFSDPLFVRTGSGMLPTARAQSLERSLSL-LKALLAA 95
>UniRef50_A6TGG7 Cluster: Putative bacterial regulatory protein,
LysR; n=1; Klebsiella pneumoniae subsp. pneumoniae MGH
78578|Rep: Putative bacterial regulatory protein, LysR -
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Length = 308
Score = 44.0 bits (99), Expect = 0.003
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 3/170 (1%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAE--NQLSQFQTDLIIDNMF 334
QR TI T +LP++ A++ + D + N L + DL I +
Sbjct: 95 QRNFTIGMTDISQMTLLPLLQIALQQQAADGITFTVQNLDEQTLNALESGKCDLAIGYLT 154
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KM-TERLSTTAHVLLLPEEQNFSGLRQRVQE 157
+V LF + V + E +P ++ E H+ + E + + + E
Sbjct: 155 QLPESVYQQHLFEQSYVCLAAENHPRIRAQLRAEDWRQEKHLAIRVEGTAHGDMDKLLDE 214
Query: 156 MFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R+I T + L LVA SDM+A++P+ +R +P P P
Sbjct: 215 HHMPRRIALTLPSFLGTGELVAESDMIAVVPEQVARHITRRYPCRSWPLP 264
>UniRef50_A6EZR5 Cluster: Transcriptional regulator, LysR family
protein; n=1; Marinobacter algicola DG893|Rep:
Transcriptional regulator, LysR family protein -
Marinobacter algicola DG893
Length = 306
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S ++KLR F D LFIR G GVTPTA+A L
Sbjct: 37 AVSDQLKKLRATFNDRLFIRSGNGVTPTAYARTL 70
Score = 39.1 bits (87), Expect = 0.097
Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFC 331
RTITI++T +LP + + ++ P +L ++ + + N L DL++ N
Sbjct: 97 RTITISSTDLEQKTILPFLMQRLRREAPGLRLAVKKLELDEMANDLLDGSVDLVLTNPKF 156
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQR-VQE 157
+ L+++ V + + N M+ +++ V++ P +F+G R ++
Sbjct: 157 APPSYPSLTLYSERYVCVAGKANEAVRSTMSVAEIASMPQVVVSPSRGDFTGAVHRWFED 216
Query: 156 MFPDRQINFTSYNILTIAALVANSDMLAIIP 64
RQ + A ++ +D++ IP
Sbjct: 217 QGHPRQAMLSVPTFTAAKATISETDLVGFIP 247
>UniRef50_A5L3Z3 Cluster: Transcriptional regulator; n=3;
Vibrionales|Rep: Transcriptional regulator - Vibrionales
bacterium SWAT-3
Length = 311
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD--SNE 501
IS ++ +L+ LF+R G+GV PTA++ L+E I + + G +D S E
Sbjct: 37 ISTALGRLKNEIGQELFVRSGRGVVPTAYSQSLYEQIKAPIHELNGVFQGMAGFDEASTE 96
Query: 500 R*LLRPLPRSEHWSFLSSIGRL 435
R + +P W L +L
Sbjct: 97 RRFVASVPEHLKWMLLDRFSQL 118
>UniRef50_A0IJM6 Cluster: Transcriptional regulator, LysR family;
n=2; Enterobacteriaceae|Rep: Transcriptional regulator,
LysR family - Serratia proteamaculans 568
Length = 310
Score = 44.0 bits (99), Expect = 0.003
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S ++ +LR +F DPLF+R G G+ PTA A L I LE I AL +D
Sbjct: 36 SVSNALARLRTLFDDPLFVRSGGGMLPTARAHQLMLQIQPVLEQIHQALTPPTRFD 91
Score = 35.1 bits (77), Expect = 1.6
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = -1
Query: 216 HVLLLPEEQNFSG--LRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLF 43
H L P + + + QR+ EM +R++ T +I+ + A+VA SD++A + F
Sbjct: 198 HALYAPSDDGSARGIIDQRLTEMGLERRVAATFSHIIALPAVVAGSDLIATLATSVARQF 257
Query: 42 SRCWPLEKLPFPS 4
+ ++ LP PS
Sbjct: 258 ADPSRIQFLPLPS 270
>UniRef50_P46924 Cluster: Probable HTH-type transcriptional
regulator leuO; n=40; Enterobacteriaceae|Rep: Probable
HTH-type transcriptional regulator leuO - Salmonella
typhimurium
Length = 314
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEG 519
A+S ++ +L+V+F D LF+R G+G+ PTA A L + Q L+ + L G
Sbjct: 52 AVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSG 104
>UniRef50_Q5E3C2 Cluster: Transcriptional regulators, LysR family;
n=2; Vibrionaceae|Rep: Transcriptional regulators, LysR
family - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 309
Score = 43.6 bits (98), Expect = 0.005
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYIS---QGLESILGA 534
AISQ++QKLR F D LFI+ G+ PT FA L E I GL S+L A
Sbjct: 39 AISQALQKLRNHFNDELFIKVRHGLKPTPFAEELAENIQPYLDGLSSVLNA 89
>UniRef50_Q392L0 Cluster: Transcriptional regulator, LysR family;
n=10; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia sp. (strain 383) (Burkholderia
cepacia (strain ATCC 17760/ NCIB 9086 / R18194))
Length = 306
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S S+ +LR +F DPLF+R G+ PT A+ L + + L+ + AL +D
Sbjct: 37 AVSYSLGRLRTLFDDPLFVRTRSGMQPTPVALELAGIVGKALDMVRVALRYAERFD 92
>UniRef50_Q1Z3B6 Cluster: Probable Transcription regulator, LysR
family protein; n=1; Photobacterium profundum 3TCK|Rep:
Probable Transcription regulator, LysR family protein -
Photobacterium profundum 3TCK
Length = 303
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYIS 561
A+S ++ +LR +F DPLFIR +G+ PTA A+ L + +S
Sbjct: 39 AMSHTLSRLRTVFDDPLFIRNAKGLEPTARALELSDKLS 77
>UniRef50_Q1M9F6 Cluster: Putative LysR-family transcriptional
regulator; n=1; Rhizobium leguminosarum bv. viciae
3841|Rep: Putative LysR-family transcriptional regulator
- Rhizobium leguminosarum bv. viciae (strain 3841)
Length = 317
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AIS S+ +LR +F D LF R+ + PTA A L E ISQ L I A+D ++D
Sbjct: 39 AISHSLGRLRDVFKDDLFTREAGIMEPTARAKELAEVISQALHEIRVAVDRHLNFD 94
>UniRef50_Q13QG3 Cluster: Transcriptional regulator, LysR family;
n=4; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Burkholderia xenovorans (strain LB400)
Length = 316
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++++LR +F DPLF+R G+ PT A+ LH ++Q I A+ +D
Sbjct: 39 AVSHALRRLRALFDDPLFVRTPTGMVPTDAALRLHAPLTQAFGIINVAVQQIARFD 94
Score = 34.7 bits (76), Expect = 2.1
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 1/139 (0%)
Frame = -1
Query: 420 QLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*KM 241
+L + N + + + + DL + + + LF D V + R G+PL K
Sbjct: 130 RLEIANVSVDSVSSAMRSGEIDLALGYVPGLDTGCVSKTLFVDEHVCVVRAGHPLRKQKP 189
Query: 240 T-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIP 64
T E L+ +V + Q ++E+ R I + + +V ++D+ I P
Sbjct: 190 TKEDLANLRYVYASTNATGHRMVEQWLEELNLRRDIVLRLPHFVVAPEIVQHTDLAMIFP 249
Query: 63 QPFYNLFSRCWPLEKLPFP 7
+ F+R LP P
Sbjct: 250 RSIAQRFNRNKAFRILPLP 268
>UniRef50_A6F7Q1 Cluster: Transcriptional regulatory protein; n=1;
Moritella sp. PE36|Rep: Transcriptional regulatory
protein - Moritella sp. PE36
Length = 355
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGA 534
++S ++ ++R ++ DPLF++KG+G+ PT FA + I L SI A
Sbjct: 83 SVSNAVSRMRHVWQDPLFVKKGRGIRPTPFAETMWRDIEAPLHSIKNA 130
Score = 41.1 bits (92), Expect = 0.024
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPP-ISDAENQLSQFQTDLIIDNMFC 331
+RT IA T + + + + I+ P + + P + + E L D+++D
Sbjct: 142 KRTFRIALTDWMVDIFWLPLRKLIEEQAPDINIHAVPYVVNGERLLLDADVDMVLDYYEG 201
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTA---HVLLLPEEQNFSGLRQRVQ 160
+N V+ LF ++ V + R +PL T L+T A H+L+ G+ +
Sbjct: 202 SNERVKTQWLFDNHFVCVMRPEHPLV--NQTLDLTTFAQAEHLLMSLSGDASGGVDTILS 259
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQP 58
+ +R+I T + + L+ NSD++ IP P
Sbjct: 260 KHGLERRIAMTVNHCYNLPKLLENSDLITTIPLP 293
>UniRef50_A4XX96 Cluster: Transcriptional regulator, LysR family;
n=3; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Pseudomonas mendocina ymp
Length = 312
Score = 43.6 bits (98), Expect = 0.005
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
T++IA T V A ++ + A++ P ++ LR + E Q+++ + DL + NM
Sbjct: 98 TVSIACTDYVQAALIKHLVVAMRREAPGVRIALRILDVPQLELQMTRGEVDLAVINMNGA 157
Query: 327 NRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFS-GLRQRVQEM 154
+ L+ ++ VLI R G+P L + + HV++ FS + +
Sbjct: 158 PPALHAQHLYDESYVLIGRRGHPSLHAGLTVDEFAQLEHVVVSLRGGGFSTSVDNALVAR 217
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQ 61
R + ++ + L + LVA SD +A++P+
Sbjct: 218 GLRRNVVLSASSFLPVPELVAQSDCVALVPR 248
Score = 37.1 bits (82), Expect = 0.39
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S + +LR +F DPL I +G+TPT A+ L + Q L+ +
Sbjct: 36 AVSAQLSRLRDVFNDPLLIPAQRGMTPTVKALELLVPLRQALDQV 80
>UniRef50_Q8YZV2 Cluster: Transcriptional regulator; n=2;
Nostocaceae|Rep: Transcriptional regulator - Anabaena
sp. (strain PCC 7120)
Length = 305
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR++F D LFIR G+ + PTA A+ + IS L+ I L+ ++D
Sbjct: 39 AMSAALARLRILFQDELFIRIGREMQPTAKALEISPGISVALQQIRQTLESSQTFD 94
Score = 33.1 bits (72), Expect = 6.4
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = -1
Query: 324 RTVQHHVLFTDNMVLICREGNPLPL*K-MT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
R + LF ++ V +CR G+P+ + MT E + L + + + + +
Sbjct: 162 RQTRQMPLFEEHFVGLCRRGHPVVTQESMTPETFARLPQALFTLRRDDIGEIDKVLAQYN 221
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R++ T+ ++L + ++++SD++ +IP F+ LE P
Sbjct: 222 LQRRVVLTTPHLLILPTVISSSDLVTVIPSRLLTPFAYKDTLEIFELP 269
>UniRef50_Q6D192 Cluster: LysR-family transcriptional regulator;
n=3; Gammaproteobacteria|Rep: LysR-family
transcriptional regulator - Erwinia carotovora subsp.
atroseptica (Pectobacterium atrosepticum)
Length = 310
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYIS---QGLESILG 537
A+S ++ +LR +F DPLFIR GQ + PTA A +L +S + L+S+LG
Sbjct: 38 AVSGALARLRTLFDDPLFIRTGQVMRPTARADYLATRLSPAFEHLQSVLG 87
>UniRef50_Q5E5X9 Cluster: Transcriptional regulators, LysR family;
n=1; Vibrio fischeri ES114|Rep: Transcriptional
regulators, LysR family - Vibrio fischeri (strain ATCC
700601 / ES114)
Length = 312
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
+S+++ +LR F D LFIR G+TPT A+ + + I+ + + AL+ +DS++
Sbjct: 39 VSRALARLRDFFEDELFIRSHYGLTPTPKALEIGDNIAPAMTLLFSALEPSDKFDSSQ 96
>UniRef50_Q399F7 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia sp. 383|Rep: Transcriptional
regulator, LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 313
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
IS ++++LR I DPL +R G + PT+ AM L E + Q L I L+ ++D
Sbjct: 37 ISVALRRLRAITGDPLLVRSGSRMVPTSHAMTLVEPLDQALAGIAAVLNPASTFD 91
>UniRef50_A6W028 Cluster: Transcriptional regulator, LysR family;
n=1; Marinomonas sp. MWYL1|Rep: Transcriptional
regulator, LysR family - Marinomonas sp. MWYL1
Length = 309
Score = 43.2 bits (97), Expect = 0.006
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Frame = -1
Query: 393 SDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTA 217
++ QL Q + DL+I + +L+ + V + + + + ++T E+ +
Sbjct: 136 NNPHEQLEQGKADLLIIPSDFMSTEHPCDILYEEEFVCVVWKHSKIASGELTAEKYAAAG 195
Query: 216 HVLLLPE--EQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLF 43
HVL+ PE +++F G Q+ R + T+++ ++ ALV S+ +A I
Sbjct: 196 HVLMRPEATKKDFFGTLF-TQKYGIKRHVIATTFSFASLPALVIGSENIATIHARLATKM 254
Query: 42 SRCWPLEKLPFP 7
++ WPL+ LP P
Sbjct: 255 AKVWPLKILPLP 266
>UniRef50_A6VS92 Cluster: Transcriptional regulator, LysR family;
n=3; Oceanospirillales|Rep: Transcriptional regulator,
LysR family - Marinomonas sp. MWYL1
Length = 295
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
AIS ++KLR+I D LF+R G G+ PT +A + +I Q L I
Sbjct: 35 AISLQLKKLRIILGDQLFVRTGHGMIPTPYAKEIESHIQQILIQI 79
>UniRef50_A5L763 Cluster: Transcriptional regulator; n=1;
Vibrionales bacterium SWAT-3|Rep: Transcriptional
regulator - Vibrionales bacterium SWAT-3
Length = 301
Score = 43.2 bits (97), Expect = 0.006
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS-DAENQLSQFQTDLIIDNMFCTN 325
T IA +++LP I I+ P+ ++ I D + + + DL++D + +
Sbjct: 96 TFRIAAMSISSSVILPQILDRIQEEAPECVIEVVNIKEDMATDIREKKIDLVVD-LTNAH 154
Query: 324 RTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFP 148
T+ ++ D + ++C + + ++T E+ + HV+L + + L + +F
Sbjct: 155 PTLLSQEIWGDELCMVCSQNHSQINEQVTLEQYLSAKHVMLTHDNYRVNQLTEFHSPIFA 214
Query: 147 DRQINFTSYNILTIAALVANSDMLAIIPQPFYNLF 43
DR++ +I + + NSD +A P+ N +
Sbjct: 215 DRKVARKLNSIADFSDTIYNSDWIATFPKGVANAY 249
>UniRef50_A3RTM4 Cluster: NahR; n=7; Burkholderiales|Rep: NahR -
Ralstonia solanacearum UW551
Length = 321
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDS 507
A+S ++ +LR F D LF+R +G+ PTA A L E +S L+++ AL +D+
Sbjct: 49 AVSNALARLRQTFDDDLFVRTPRGMMPTALAEQLAEPVSAALDTLQRALGQRTHFDA 105
>UniRef50_A0LD88 Cluster: Transcriptional regulator, LysR family;
n=1; Magnetococcus sp. MC-1|Rep: Transcriptional
regulator, LysR family - Magnetococcus sp. (strain MC-1)
Length = 312
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER 498
A+S ++++LR F DPLFI+ G + PT AM L I L+ + ALD + +N
Sbjct: 42 AMSNTLRRLRTAFDDPLFIKTGARMEPTPRAMELSGMIEAALKQVHVALDNDSFDPANSH 101
Query: 497 *LLR 486
+ R
Sbjct: 102 YVFR 105
>UniRef50_Q5E7C7 Cluster: Transcriptional regulators, LysR family;
n=3; Vibrionaceae|Rep: Transcriptional regulators, LysR
family - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 330
Score = 42.7 bits (96), Expect = 0.008
Identities = 20/59 (33%), Positives = 39/59 (66%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
A+S S+ +LR + DPLF R+G + PTA A+ L+ +++ L++I G + +++++E
Sbjct: 59 AMSHSLSRLRELLHDPLFERQGHQMIPTAKAIQLYPLVNKVLQTISGDILKVDTFEASE 117
Score = 35.1 bits (77), Expect = 1.6
Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
T I T L I+ AI P QL ++ +++ DL+I +M
Sbjct: 121 TFKIGMTDYAELLFAADIFDAIHQLAPNAQLCFTTVDKANYQDRFDSEPLDLVIGSMKPE 180
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
+ Q+ L+T+ V + L +T + + H L+ P+ +G+ + ++ +
Sbjct: 181 LKEFQYQTLYTEKHVCMWDGQRHLFSSPITLDDYISLPHALVSPDGALKTGVDKELKALG 240
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQ 61
R ++ S + LTI L+ D++ ++P+
Sbjct: 241 VGRSVSVASKHFLTIRHLMKKRDLICVVPE 270
>UniRef50_Q2SG65 Cluster: Transcriptional regulator; n=1; Hahella
chejuensis KCTC 2396|Rep: Transcriptional regulator -
Hahella chejuensis (strain KCTC 2396)
Length = 314
Score = 42.7 bits (96), Expect = 0.008
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR +F DP+ +R QG+TPT A+ L + L I AL ++D
Sbjct: 41 AVSGALSRLRELFDDPILVRTAQGMTPTVKALQLEAELLPALGKIHSALFEPSTFD 96
>UniRef50_Q2IYM8 Cluster: Transcriptional regulator, LysR family;
n=2; Rhodopseudomonas palustris|Rep: Transcriptional
regulator, LysR family - Rhodopseudomonas palustris
(strain HaA2)
Length = 317
Score = 42.7 bits (96), Expect = 0.008
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR F DPLF+R G+GV PT + + E + + L I D + S D
Sbjct: 39 AVSNALTRLREHFDDPLFVRAGRGVKPTLRSQQMIEPVREALRLIRQQFDGDRSLD 94
>UniRef50_Q1YXP8 Cluster: Transcriptional regulators, LysR family
protein; n=3; Vibrionaceae|Rep: Transcriptional
regulators, LysR family protein - Photobacterium
profundum 3TCK
Length = 312
Score = 42.7 bits (96), Expect = 0.008
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
AISQ++Q+LR F D LF++ G+ PT +A L E I+ L+ + AL+ + +++ E
Sbjct: 38 AISQALQRLRNHFGDELFLKSINGLKPTPYAEDLAERITPFLDGLAHALNTQDTFNPLE 96
>UniRef50_Q1YQB9 Cluster: Transcriptional regulator, LysR family
protein; n=1; gamma proteobacterium HTCC2207|Rep:
Transcriptional regulator, LysR family protein - gamma
proteobacterium HTCC2207
Length = 285
Score = 42.7 bits (96), Expect = 0.008
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCTN 325
+++A PSV +LP I + T +P L L + ++++ + D I +M+ N
Sbjct: 83 VSMAVVPSVATNLLPDIIKTFATEFPGINLHLDDDSSRGVQHRVESNEVDFGIGSMWNPN 142
Query: 324 RTVQHHVLFTDNMVLICREGNPL 256
+ ++ LF D + LIC +PL
Sbjct: 143 KVLEFTPLFADKLELICHRDHPL 165
>UniRef50_A6D744 Cluster: Putative transcriptional regulator; n=1;
Vibrio shilonii AK1|Rep: Putative transcriptional
regulator - Vibrio shilonii AK1
Length = 311
Score = 42.7 bits (96), Expect = 0.008
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
AISQ++QKLR D LF++ G+ PT FA+ + E I+ L+ + +L+ + +E
Sbjct: 41 AISQALQKLRFHLDDELFVKVQGGLEPTPFALQVEEKIAPYLDGLEASLEQLSDFSPSE 99
>UniRef50_Q8KY13 Cluster: LysR-type transcriptional activator; n=1;
Rhizobium sp. TAL1145|Rep: LysR-type transcriptional
activator - Rhizobium sp. TAL1145
Length = 320
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
AIS S+ +LR IF D LF+++ + PTA A L I+Q L I G + ++ +E
Sbjct: 40 AISHSLNRLREIFGDELFVKRAGSMNPTAQARELATVITQALSDIEGVVSQRINFKPSE 98
>UniRef50_Q13JD9 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia xenovorans LB400|Rep: Transcriptional
regulator, LysR family - Burkholderia xenovorans (strain
LB400)
Length = 305
Score = 42.3 bits (95), Expect = 0.010
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDS 507
+S ++ +LR + DPLF R +G+ PT A L+E Q L+ I GA+ +D+
Sbjct: 42 VSYALSRLRTLLHDPLFSRTREGMAPTFNASQLYETFRQALDRIEGAIAATRYFDA 97
>UniRef50_A6GJJ5 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Plesiocystis pacifica SIR-1|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Plesiocystis pacifica SIR-1
Length = 304
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S + +LR F DPL + G G+ PTA A+ L E +++GL AL E +D
Sbjct: 21 AMSHRLARLRERFDDPLLLPSGAGMQPTARALQLVEPVARGLLEFDAALRSEARFD 76
>UniRef50_A2W526 Cluster: Transcriptional regulator; n=6;
Burkholderia cepacia complex|Rep: Transcriptional
regulator - Burkholderia cenocepacia PC184
Length = 350
Score = 42.3 bits (95), Expect = 0.010
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++ KLR +F DPLF+R G+G+ PT A L E +++ L+ +
Sbjct: 66 AMSYALSKLRELFEDPLFVRTGRGMEPTPRAQALGEPVARLLDLV 110
Score = 37.1 bits (82), Expect = 0.39
Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Frame = -1
Query: 474 VGALV-LPVIYRAIKTHYPQLLLRNPPIS--DAENQLSQFQTDLIIDNMFCTN-RTVQHH 307
+G +V LP + + P + ++ +S + E L+ DL I N +++
Sbjct: 136 IGEMVFLPRLESFLDKAAPHVSIKTVALSMPELEEGLASGDVDLAIGYFPGLNSESLKRK 195
Query: 306 VLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINF 130
L+ + V I R+ +P ++ ++ AHV++ E + L + + + + F
Sbjct: 196 ALYRHSYVCIARDDHPEIGDTLSLDQYRAAAHVMVHSEGREQDVLARTHERLGIRVNVRF 255
Query: 129 TSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
++ + + +VA SDM+A +PQ F+ ++ LP P
Sbjct: 256 STPRFIGVPFVVAGSDMIAAVPQAVGRRFAEFVNVKLLPLP 296
>UniRef50_Q9KP88 Cluster: Transcriptional regulator, LysR family;
n=32; Vibrionales|Rep: Transcriptional regulator, LysR
family - Vibrio cholerae
Length = 321
Score = 41.9 bits (94), Expect = 0.014
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S ++ +L+V+F D LF+R+G+G+ PT A L I Q L+ I L
Sbjct: 55 AVSNAVARLKVMFNDELFMRQGRGIQPTQRARQLFGPIRQALQLIRNEL 103
>UniRef50_Q9RH96 Cluster: LeuO homolog; n=4; Salmonella|Rep: LeuO
homolog - Salmonella typhimurium
Length = 100
Score = 41.9 bits (94), Expect = 0.014
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL-DIEGSYDSNE 501
AISQ++ +L+ ++ + LFIR +G+ P++ LH+ Q +ESI L D + +SNE
Sbjct: 40 AISQALLRLQNLYGEELFIRTRKGLVPSSKGKSLHQVFRQAIESIESTLCDKTDAQESNE 99
>UniRef50_Q2CK92 Cluster: Transcriptional regulator, LysR family
protein; n=1; Oceanicola granulosus HTCC2516|Rep:
Transcriptional regulator, LysR family protein -
Oceanicola granulosus HTCC2516
Length = 309
Score = 41.9 bits (94), Expect = 0.014
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++++LR ++ DPLF+R+ G+ PTA A L I + + + L+ +D
Sbjct: 42 AVSHALKRLRTLYEDPLFLRRAHGLEPTALAHELEPKIRRIVRLLSQTLENPDQFD 97
>UniRef50_Q9RQD4 Cluster: MexT; n=2; Alphaproteobacteria|Rep: MexT -
Zymomonas mobilis
Length = 297
Score = 41.5 bits (93), Expect = 0.018
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
A+S+ + ++R IF DP+ +R G+ + PT AM LHE + LE
Sbjct: 35 AMSRILSRIREIFGDPILVRAGRSLVPTPRAMALHETVRHVLE 77
>UniRef50_A0Y2S4 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=3; Alteromonadales|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Alteromonadales
bacterium TW-7
Length = 309
Score = 41.5 bits (93), Expect = 0.018
Identities = 29/170 (17%), Positives = 71/170 (41%), Gaps = 4/170 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS--DAENQLSQFQTDLIIDNMF 334
+R I + ++ P + + T+ P + + + +S D E L + D++ID +
Sbjct: 95 KREIKFGFRDILESIFFPPLMSDLLTNTPNITINSRQVSHVDMEKSLENQELDIVIDVLT 154
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEM 154
T+ +++ + ++ LICR +P+ + + +H L+ + + + +
Sbjct: 155 PTSNHIKNTFICNEHFSLICRHDHPILNDLTVQSYAKASHALVSLKGAQVDIIDMALAKH 214
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLE--KLPF 10
R + + +++ SDM+ +P + + P+ LPF
Sbjct: 215 ALARNVVLKCEHYFAATKVISQSDMIMTMPNAYAQVLKEQMPVHVTSLPF 264
Score = 38.7 bits (86), Expect = 0.13
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR F DPLFIR G+ + P+ F + + + ++++ ++ E +D
Sbjct: 35 AVSHALSRLRDKFDDPLFIRHGRRMVPSPFCQKIIAQVIESVQALEATMNNERLFD 90
>UniRef50_A0KG94 Cluster: Transcriptional regulator, LysR family;
n=4; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240)
Length = 318
Score = 41.5 bits (93), Expect = 0.018
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
A+S ++ +LR F DPL +R QG+ PT A LH + Q L + L E ++ ++
Sbjct: 37 AMSHALNRLRTFFGDPLLVRTPQGMLPTPRAQRLHLGVQQALRLLEQQLSDEEVFEPSQ 95
Score = 41.1 bits (92), Expect = 0.024
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -1
Query: 216 HVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSR 37
HV P + + L + ++ + R I+ S + ++ AA+V+ SD L ++P L +
Sbjct: 213 HVFHSPLGTSEASLDRYLKTLGFSRTISVNSQSYMSAAAIVSQSDHLLVLPSMVAELLAS 272
Query: 36 CWPLEKLPFP 7
WPL+ LP P
Sbjct: 273 HWPLKSLPLP 282
>UniRef50_P52698 Cluster: HTH-type transcriptional regulator phcA;
n=10; Burkholderiaceae|Rep: HTH-type transcriptional
regulator phcA - Ralstonia solanacearum (Pseudomonas
solanacearum)
Length = 347
Score = 41.5 bits (93), Expect = 0.018
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
A+S S+ +LR IF DPLFIR G+TPT A+ L + + L+
Sbjct: 34 AVSHSLGRLREIFDDPLFIRVPHGLTPTPKALELGPKVREMLD 76
>UniRef50_Q3KDF4 Cluster: Transcriptional Regulator, LysR family;
n=1; Pseudomonas fluorescens PfO-1|Rep: Transcriptional
Regulator, LysR family - Pseudomonas fluorescens (strain
PfO-1)
Length = 324
Score = 41.1 bits (92), Expect = 0.024
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
IS ++ +LRV+F DPLF+R G+ + PT A + ++ L+ ++ AL
Sbjct: 40 ISAALGRLRVLFDDPLFVRAGRVMEPTRRAEEIFANLTPALDGVVAAL 87
>UniRef50_Q38ZY8 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia sp. 383|Rep: Transcriptional
regulator, LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 310
Score = 41.1 bits (92), Expect = 0.024
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD-SNE 501
A+S S+ LR++ D LFIR G+ + PT A+ L + L + AL E S+D SN
Sbjct: 42 AMSHSLSTLRLLLRDELFIRVGRTLQPTPRALSLQHTVRSSLLQLQEALKTEESFDPSNA 101
Query: 500 R 498
R
Sbjct: 102 R 102
>UniRef50_Q2S713 Cluster: Transcriptional regulator; n=1; Hahella
chejuensis KCTC 2396|Rep: Transcriptional regulator -
Hahella chejuensis (strain KCTC 2396)
Length = 329
Score = 41.1 bits (92), Expect = 0.024
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S ++ ++R ++ DPLF++ G+G+ PT A+ L +S L + A++
Sbjct: 34 AVSNAVARMRQVWNDPLFVKNGRGIQPTTHALSLWHQVSGPLIQLKDAVN 83
Score = 39.9 bits (89), Expect = 0.056
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Frame = -1
Query: 444 RAIKTHYPQLLLRNPPIS--DAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICR 271
R ++T P + L P + ++E+ L+ + DLI+ M + ++ LF + V R
Sbjct: 114 RMVETEAPNIDLHAVPANGNNSESILTNGEVDLIVGVMQEFRTSFRNDFLFESDYVCAMR 173
Query: 270 EGNPLPL*KMT-ERLSTTAHVL--LLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAA 100
+ +PL +T E+ H+L L E F + Q + R++ T + ++ A
Sbjct: 174 KDHPLAAEPLTLEKYLKADHLLVSLTGEATGFVDITLSQQGL--SRRVAMTVNHFASVPA 231
Query: 99 LVANSDMLAIIPQPFYNLFSRCWPL 25
L+ SD+++I+P ++C L
Sbjct: 232 LLEGSDLISIVPNMVIAKGAKCGSL 256
>UniRef50_Q1R0T8 Cluster: Transcriptional regulator, LysR family;
n=8; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 308
Score = 41.1 bits (92), Expect = 0.024
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
++S S+ +LR +F DPLF R G+ PT AM L+ Q L I L +D +
Sbjct: 34 SVSYSLSRLRELFDDPLFSRTRDGMAPTFCAMRLYTSFRQALTQIEQTLSDAQHFDPEQ 92
>UniRef50_Q0SCY7 Cluster: Transcriptional regulator, LysR family
protein; n=3; Actinomycetales|Rep: Transcriptional
regulator, LysR family protein - Rhodococcus sp. (strain
RHA1)
Length = 331
Score = 41.1 bits (92), Expect = 0.024
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDS 507
++S S+++LR F D LFIR G+ PT A ++ + Q LE I + G +D+
Sbjct: 61 SVSHSLRRLRRQFNDDLFIRSSDGLAPTVLAASMYPQLHQALEVIDETVSGVGHFDA 117
Score = 37.5 bits (83), Expect = 0.30
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 3/169 (1%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPI--SDAENQLSQFQTDLIIDNMFC 331
RT I T +LP + A++T P ++ P+ + A +L Q + D +I
Sbjct: 122 RTFRICATDLGEISLLPGVLAALETRAPGCAVQVTPLDFASAAEELRQGRADAVICTPRI 181
Query: 330 TNRTVQHHVLFTDNMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEM 154
++ LF + V +C G+P + + + H+++ + Q + M
Sbjct: 182 DAPDLRRDPLFREGYVGLCALGHPRIGVEPGLDDFLAERHIVVDAAAGHVDA-DQALARM 240
Query: 153 FPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R I + + LVA + LA++P LF+R P+ P
Sbjct: 241 GRRRDIAVRVPHFAVLPELVAQTRHLAVVPSRVAELFTRSSPVRTFALP 289
>UniRef50_A6VZT8 Cluster: Transcriptional regulator, LysR family;
n=1; Marinomonas sp. MWYL1|Rep: Transcriptional
regulator, LysR family - Marinomonas sp. MWYL1
Length = 303
Score = 41.1 bits (92), Expect = 0.024
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Frame = -1
Query: 402 PPISDAENQLSQFQTD-LIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERL 229
P +SD +N+L + + D LI+ +FC++ + L TD V + + + L MT +
Sbjct: 132 PQVSDPKNELDRGEADLLILPEIFCSDYHLS-EPLITDEFVCVVWDQSELSKKGMTMDAF 190
Query: 228 STTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAII 67
+ H+ + P N S + R+I+ +Y+ I +LV ++++A +
Sbjct: 191 MSAGHICMQPPNSNPSFETHAYKIKGVSRRIDVRTYSFSCIPSLVVGTNLIATL 244
>UniRef50_A6CX36 Cluster: Transcriptional regulator; n=1; Vibrio
shilonii AK1|Rep: Transcriptional regulator - Vibrio
shilonii AK1
Length = 308
Score = 41.1 bits (92), Expect = 0.024
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYIS 561
++SQSI+KL + LF+R+G+G+TPT A HL E I+
Sbjct: 42 SVSQSIKKLSIELNTSLFMRRGRGITPTLQAHHLIERIA 80
>UniRef50_A6CUQ2 Cluster: Putative transcription regulator protein;
n=1; Vibrio shilonii AK1|Rep: Putative transcription
regulator protein - Vibrio shilonii AK1
Length = 298
Score = 41.1 bits (92), Expect = 0.024
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER 498
AIS+ + KLR DPLF+R G+ PT + + I GL S+ AL ++D E+
Sbjct: 35 AISKHLSKLREQLGDPLFVRSSNGLEPTHYLERIIPGIETGLRSVEQALKRGEAFD--EK 92
Query: 497 *LLRPLPRSEHWSFLSSIG-RLKLTIRSFYCATR 399
+P+ + + G L + ++S +C +R
Sbjct: 93 NYEKPIVVALDNLSIECFGTELLVALKSVFCRSR 126
>UniRef50_A3RVN4 Cluster: Transcriptional regulators, LysR family;
n=8; Proteobacteria|Rep: Transcriptional regulators,
LysR family - Ralstonia solanacearum UW551
Length = 323
Score = 41.1 bits (92), Expect = 0.024
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
A+S ++ +LR +F DPLF R+GQG+ PT A L + L+
Sbjct: 42 AVSHALGRLRALFDDPLFERRGQGMVPTPLARTLVAEVRTALQ 84
Score = 39.1 bits (87), Expect = 0.097
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNP--PISDAENQLSQFQTDLIIDNMF 334
+R T++ ++ A +LP + AI P++ + E +L D +D +
Sbjct: 102 ERRFTLSMRDALEATLLPPLMAAIAREAPRIDVTTVRGDRRQLEAELLGGTIDAAVDILL 161
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQ-RVQ 160
+ ++H L +D M ++ R G+P+ +T ER HV + + +GL ++
Sbjct: 162 PVSPAIRHAPLLSDPMAVLARPGHPITQGPLTLERYLAYEHVHVSSRRRG-AGLEDVELR 220
Query: 159 EMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
+ +R++ + +V+ +D+L +P + + + + LP P
Sbjct: 221 RLGRERRVRLRCQHYPAACRVVSCTDLLVTLPVRYARIANAPYGNVMLPLP 271
>UniRef50_A3JFF7 Cluster: Transcriptional regulator; n=1;
Marinobacter sp. ELB17|Rep: Transcriptional regulator -
Marinobacter sp. ELB17
Length = 307
Score = 41.1 bits (92), Expect = 0.024
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYI 564
A+S +I ++R ++ DPLF+RKG+ + PT++A L + I
Sbjct: 34 AVSNAISRMRQVWNDPLFVRKGRKIEPTSYAFSLWKRI 71
>UniRef50_A0X8E8 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella pealeana ATCC 700345|Rep:
Transcriptional regulator, LysR family - Shewanella
pealeana ATCC 700345
Length = 298
Score = 41.1 bits (92), Expect = 0.024
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AIS+++Q+LR DPLFIR+ G+ PT +A+ L ++ + I A D E S+D
Sbjct: 40 AISKNLQRLREELCDPLFIRQPSGLEPTTYALTLTAKLTNIQKDIDAAFDSE-SFD 94
>UniRef50_A0V7D4 Cluster: Transcriptional regulator, LysR family;
n=1; Delftia acidovorans SPH-1|Rep: Transcriptional
regulator, LysR family - Delftia acidovorans SPH-1
Length = 332
Score = 41.1 bits (92), Expect = 0.024
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++++LR F DPL +R +G++PT A+ L + I A+++ +D
Sbjct: 50 AVSHALRRLRTQFNDPLLLRTAEGMSPTPEAVRLARSFRKAFSEIESAIEVSKGFD 105
>UniRef50_A0NZC9 Cluster: LysR family regulatory protein; n=3;
Rhodobacteraceae|Rep: LysR family regulatory protein -
Stappia aggregata IAM 12614
Length = 305
Score = 41.1 bits (92), Expect = 0.024
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
A+S ++ +LRV+ D LF R +GV+PT A L I +GL I A+ ++ +
Sbjct: 37 AVSHALARLRVMLNDELFFRTAEGVSPTERARELSVDIERGLSFISTAISLQHQF 91
Score = 41.1 bits (92), Expect = 0.024
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 2/168 (1%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS-DAENQLSQFQTDLIIDNMFCT 328
R T+ V +LP + + +++ P + + P S E+ + + +
Sbjct: 98 RVFTMQVADYVAGFLLPRLAKRLQSEAPGITIDILPFSISPESVWDRVDMQVRLTPGRLQ 157
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMTERL-STTAHVLLLPEEQNFSGLRQRVQEMF 151
V+ L D +V++ R G+P MT L + HV L + + +
Sbjct: 158 PEMVRSQRLLADEIVVLMRRGHPRVDEPMTAELYAELPHVKLSQSATGTTVIEDALAARG 217
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
R + T + I +VA SD++AI PQ +L R L P P
Sbjct: 218 LKRHMAMTVASWFEIPDIVARSDLIAIAPQRLLSLDPRLGKLHSAPLP 265
>UniRef50_Q081K6 Cluster: Transcriptional regulator, LysR family
protein; n=2; Alteromonadales|Rep: Transcriptional
regulator, LysR family protein - Shewanella
frigidimarina (strain NCIMB 400)
Length = 326
Score = 40.7 bits (91), Expect = 0.032
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S +I++LR++ DPLF+R+G + PTA + + L I L G +D
Sbjct: 58 AVSHAIKRLRLVLNDPLFVRQGLQMQPTAACQRMAPQLISALNRIRQVLQQCGEFD 113
>UniRef50_A6CVD4 Cluster: Transcriptional regulator, LysR family
protein; n=1; Vibrio shilonii AK1|Rep: Transcriptional
regulator, LysR family protein - Vibrio shilonii AK1
Length = 325
Score = 40.7 bits (91), Expect = 0.032
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+SQS+QKLR F DPLF++ G+ PT F+ L
Sbjct: 39 AVSQSLQKLRHQFDDPLFVKVKSGLAPTPFSEQL 72
>UniRef50_A3RSL5 Cluster: Transcriptional regulators, LysR family;
n=2; Ralstonia solanacearum|Rep: Transcriptional
regulators, LysR family - Ralstonia solanacearum UW551
Length = 304
Score = 40.7 bits (91), Expect = 0.032
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR +F DPLF+ G+ PT +A L I + L + AL + +D
Sbjct: 36 AMSNALARLREVFADPLFVPSPYGMRPTPYAQQLAVPIDRALREVEQALAMSKGFD 91
>UniRef50_A3JFT7 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=3; Marinobacter|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Marinobacter sp.
ELB17
Length = 312
Score = 40.7 bits (91), Expect = 0.032
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S S+ +LR F DPLF R+G + PT A E + GL I A+ S+D
Sbjct: 39 ALSHSLARLRAWFNDPLFSRQGNRMVPTPLATRFIESMRPGLNQIHSAVAQFHSFD 94
Score = 37.1 bits (82), Expect = 0.39
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS--DAENQLSQFQTDLIIDNMF 334
++T ++A + + LP + + YP L + + ++ D E+QL+ + D ID +
Sbjct: 99 RKTFSLALRDILESTFLPQLMAQLAP-YPDLGIVSQRVARRDMESQLAAGKLDFAIDVLL 157
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMTE---RLSTTAHV--------LLLPEEQN 187
+ H L D +V++ R+ +P TE LST ++ +L+
Sbjct: 158 PVSEHTGHQWLHQDPLVVLARKDHPWVTMAPTETSDELSTERYLAAYLQAQHVLVSSRAT 217
Query: 186 FSGLRQ-RVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPF 10
SG+ + + R I + +VAN+++L +P + L + L +P
Sbjct: 218 GSGVEDFELSRLGLQRDIRLRCQHYFAACRVVANTELLLTMPASYARLLASHHDLAVMPT 277
Query: 9 PS 4
P+
Sbjct: 278 PA 279
>UniRef50_Q8XRG7 Cluster: Probable transcriptional regulator
transcription regulator protein; n=1; Ralstonia
solanacearum|Rep: Probable transcriptional regulator
transcription regulator protein - Ralstonia solanacearum
(Pseudomonas solanacearum)
Length = 308
Score = 40.3 bits (90), Expect = 0.042
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGL 552
A+S+ + +LR + D LF+R +GV PTAFA L E +S L
Sbjct: 44 AVSRGLARLRETYGDELFVRHRRGVEPTAFAQTLAEPVSAAL 85
>UniRef50_Q7VQS7 Cluster: LysR-family transcriptional regulator;
n=3; Enterobacteriaceae|Rep: LysR-family transcriptional
regulator - Blochmannia floridanus
Length = 307
Score = 40.3 bits (90), Expect = 0.042
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
AIS+S+ K+R++F D + +R G +TPT AM L E I + I
Sbjct: 34 AISKSLNKIRILFNDQILVRSGTKLTPTPKAMALKENIKDLVNQI 78
>UniRef50_Q7D3Y4 Cluster: AGR_pAT_125p; n=3; Rhizobiaceae|Rep:
AGR_pAT_125p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 343
Score = 40.3 bits (90), Expect = 0.042
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S +I LR +F D LFIR GQ + PTA A++L + Q L A+ + +++
Sbjct: 68 AMSHNISTLRTLFQDELFIRVGQIMKPTARALNLSGPVRQALRQAQAAVLMADAFE 123
>UniRef50_Q1T7B6 Cluster: Putative LysR-type transcriptional
activator; n=1; Pseudomonas sp. HI-70|Rep: Putative
LysR-type transcriptional activator - Pseudomonas sp.
HI-70
Length = 312
Score = 40.3 bits (90), Expect = 0.042
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESIL-GALDIEGSYDSN 504
A+S ++ +LR + D LFI+ +GVTPT A L +++ L+S+ G +I +++ N
Sbjct: 45 AMSNALSRLRSLSGDRLFIKSHRGVTPTMVAHRLADHVRNALDSLREGLREIPSAHEHN 103
>UniRef50_A1SEI3 Cluster: Regulatory protein, LysR; n=1;
Nocardioides sp. JS614|Rep: Regulatory protein, LysR -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 300
Score = 40.3 bits (90), Expect = 0.042
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR +F D LF+R G + PTA L +++ + ++ LD+ ++D
Sbjct: 36 AMSATLGRLRKLFGDQLFVRTGGDMVPTAMGQALVGPVTEAIRAVQAVLDVVDAFD 91
>UniRef50_A1R1P0 Cluster: Putative transcriptional regulator, LysR
family; n=1; Arthrobacter aurescens TC1|Rep: Putative
transcriptional regulator, LysR family - Arthrobacter
aurescens (strain TC1)
Length = 314
Score = 40.3 bits (90), Expect = 0.042
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++ +LR++F DPLF + G+ PTA A+ L I Q L+++
Sbjct: 42 AVSAALGRLRLLFDDPLFQKSRTGMVPTAKALALAPRIGQSLKTV 86
>UniRef50_A1K8D7 Cluster: Transcriptional regulator, LysR family;
n=1; Azoarcus sp. BH72|Rep: Transcriptional regulator,
LysR family - Azoarcus sp. (strain BH72)
Length = 298
Score = 40.3 bits (90), Expect = 0.042
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S + +LR++F DPLF+R GV PT A + + Q L + LD ++
Sbjct: 36 SVSHGLTRLRLLFGDPLFVRTRSGVEPTVVADRIAGPVQQALRVLQTTLDEHAHFE 91
>UniRef50_A0X570 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella pealeana ATCC 700345|Rep:
Transcriptional regulator, LysR family - Shewanella
pealeana ATCC 700345
Length = 303
Score = 40.3 bits (90), Expect = 0.042
Identities = 15/56 (26%), Positives = 36/56 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S+++++LR F D LF+R G+ PT+ A+ + + + ++ + AL+++ ++
Sbjct: 34 AVSRALRRLRDYFGDELFVRSAHGLEPTSKALVIGSRLPEAMDQLFEALNVKEEFE 89
>UniRef50_Q8DBQ0 Cluster: LysR-like transcriptional regulator; n=11;
Gammaproteobacteria|Rep: LysR-like transcriptional
regulator - Vibrio vulnificus
Length = 301
Score = 39.9 bits (89), Expect = 0.056
Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Frame = -1
Query: 492 IATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRT 319
I T + P +Y AI+ P Q+ N ++ + + Q + D++I ++
Sbjct: 104 IGMTDYAEFIFAPKLYDAIRQQAPKAQVSFINVNRNNYVSLIEQEKLDVVIGSIPVLEEP 163
Query: 318 VQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDR 142
+ L+T+ V +C + + + +M E+ + L+ P+ Q + + + + R
Sbjct: 164 FEAQRLYTEKHVCLC-DPQQVDVTRMNIEQFAAIEQALVSPDGQLSTQVDKLLASQGLSR 222
Query: 141 QINFTSYNILTIAALVANSDMLAIIPQ 61
++ S N LTI +L+++ ++AI+P+
Sbjct: 223 RVTVASRNFLTIRSLLSHRALIAIVPE 249
Score = 36.7 bits (81), Expect = 0.52
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S S+ +LR +F D LF+RKG + P+ A + I Q L I G L
Sbjct: 39 AMSHSLNRLRGLFDDVLFVRKGHKMEPSERAHQVAPQIHQLLSVISGEL 87
>UniRef50_Q2S7V2 Cluster: Transcriptional regulator; n=1; Hahella
chejuensis KCTC 2396|Rep: Transcriptional regulator -
Hahella chejuensis (strain KCTC 2396)
Length = 310
Score = 39.9 bits (89), Expect = 0.056
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Frame = -1
Query: 465 LVLPVIYRAIKTHYPQLLLR--NPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTD 292
L+LP + + + P+++ P + L+ + DL D + + ++ H LF D
Sbjct: 110 LLLPALIKNCRAIAPKVVFNCLRSPREQILHDLASGRIDLAADVLISHDDSICHEKLFED 169
Query: 291 NMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNI 115
+ + R +P + + + HV + E ++ R++ + N
Sbjct: 170 RLTCLLRRDHPALASEWSLAEMLRWPHVQVSSREHGPGYEDIQLSRHGLQRKLGLRTPNF 229
Query: 114 LTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
A ANSD++ P+ ++ PL+ +PFP
Sbjct: 230 YGAALTAANSDLILCAPEQVARKLTQTIPLQVMPFP 265
Score = 37.5 bits (83), Expect = 0.30
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++ +LR D LFIR +G+TPT +A L + Q L +
Sbjct: 36 AVSHALNRLRETLGDELFIRSSRGMTPTPYAHQLIGTVRQALNQL 80
>UniRef50_Q13GK2 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia xenovorans LB400|Rep: Transcriptional
regulator, LysR family - Burkholderia xenovorans (strain
LB400)
Length = 311
Score = 39.9 bits (89), Expect = 0.056
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQ 558
A+SQ + +LR IF DPLFIR G+ PT A+ L +++
Sbjct: 40 AVSQKLGRLRDIFSDPLFIRTANGMEPTPHALVLSAQLAE 79
>UniRef50_A6PFD2 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella sediminis HAW-EB3|Rep: Transcriptional
regulator, LysR family - Shewanella sediminis HAW-EB3
Length = 304
Score = 39.9 bits (89), Expect = 0.056
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHE---YISQGLESILGALDIEGSY 513
A+S ++ +LR +F D LFIR +G+ PTA A+ L + +I + ++S+L +E S+
Sbjct: 39 AMSHTLARLRGVFDDSLFIRNAKGLEPTARAIELSDKLRFILREIDSLLAPKTLELSH 96
>UniRef50_A6CV60 Cluster: Transcriptional regulator, LysR family
protein; n=1; Vibrio shilonii AK1|Rep: Transcriptional
regulator, LysR family protein - Vibrio shilonii AK1
Length = 317
Score = 39.9 bits (89), Expect = 0.056
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S+++ +LR +F DPLF R+ G+ PT + L + Q L SI
Sbjct: 41 AMSRTLSRLRALFDDPLFYRESNGLQPTTKTLELEPELDQILLSI 85
>UniRef50_A3VWI6 Cluster: Transcriptional regulatory protein; n=1;
Roseovarius sp. 217|Rep: Transcriptional regulatory
protein - Roseovarius sp. 217
Length = 314
Score = 39.9 bits (89), Expect = 0.056
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIE 522
++S +IQ+LR + D LFI+ GV PTA A + I ++S++ +D E
Sbjct: 37 SVSNAIQRLREVLADDLFIKVSGGVVPTAKAEAIWPTIRNSIQSLIQTIDPE 88
>UniRef50_A1U8Q8 Cluster: Transcriptional regulator, LysR family;
n=1; Marinobacter aquaeolei VT8|Rep: Transcriptional
regulator, LysR family - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 312
Score = 39.9 bits (89), Expect = 0.056
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
++S ++ +LR +F DPLFIR Q + PT A HL I L + G + E +
Sbjct: 35 SVSAALGRLRELFKDPLFIRDRQRMRPTETADHLFPVIEAALTDLDGLITSERDF 89
>UniRef50_A0L2B3 Cluster: Transcriptional regulator, LysR family
precursor; n=9; Shewanella|Rep: Transcriptional
regulator, LysR family precursor - Shewanella sp.
(strain ANA-3)
Length = 322
Score = 39.9 bits (89), Expect = 0.056
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
IS+S++ LR F D LFIRK G+ P F HL+ Q +E
Sbjct: 40 ISRSLKNLRETFGDELFIRKKYGLFPNEFVTHLYPIAKQTIE 81
>UniRef50_A0J9T3 Cluster: Transcriptional regulator, LysR family;
n=2; Shewanella|Rep: Transcriptional regulator, LysR
family - Shewanella woodyi ATCC 51908
Length = 314
Score = 39.9 bits (89), Expect = 0.056
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
A+SQ+++K+R +F +PLF++ GQG+ T A L + + LE + L ++ ++D E
Sbjct: 42 AMSQNLKKIRNLFDEPLFVKHGQGIKATEKARSLLPGLHEWLE-MSSRLILQKAFDPKE 99
>UniRef50_Q9L122 Cluster: Putative LysR-family transcriptional
regulatory protein; n=2; Streptomyces|Rep: Putative
LysR-family transcriptional regulatory protein -
Streptomyces coelicolor
Length = 311
Score = 39.5 bits (88), Expect = 0.074
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
+S S+ KLR F D LF R G+G+TPTA A L+ + + L I G +
Sbjct: 35 VSYSLGKLRRHFDDELFRRNGRGLTPTAGARRLYLPLQRALAEIDGTV 82
>UniRef50_Q8D7J2 Cluster: Transcriptional regulator; n=8;
Vibrionales|Rep: Transcriptional regulator - Vibrio
vulnificus
Length = 301
Score = 39.5 bits (88), Expect = 0.074
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDS 507
A+S+++ +LR I+ +PLF R GV PT+FA+ ++ + ++ L +++
Sbjct: 34 AVSKALARLRDIYDEPLFHRSPSGVEPTSFAVDIYPAMLTAFKNFTSTLSASSEFEA 90
>UniRef50_Q39AY8 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia sp. 383|Rep: Transcriptional
regulator, LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 331
Score = 39.5 bits (88), Expect = 0.074
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S ++++LR +F D LF++ G+ PT A + + +GL S+ AL ++D
Sbjct: 56 SVSNALKRLRTLFDDALFVKTADGMQPTPRADAIAARVDEGLASLRTALQAGRAFD 111
>UniRef50_A6W2N0 Cluster: Transcriptional regulator, LysR family;
n=1; Marinomonas sp. MWYL1|Rep: Transcriptional
regulator, LysR family - Marinomonas sp. MWYL1
Length = 310
Score = 39.5 bits (88), Expect = 0.074
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILG 537
A+S+ + +LR F DPLFIR +G+ PT+ A+ L + LE + G
Sbjct: 39 AMSRLLNRLRDAFDDPLFIRTSKGMVPTSKALALEAPLKLMLEQLAG 85
>UniRef50_A6VUW1 Cluster: Transcriptional regulator, LysR family;
n=2; Marinomonas|Rep: Transcriptional regulator, LysR
family - Marinomonas sp. MWYL1
Length = 321
Score = 39.5 bits (88), Expect = 0.074
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYIS---QGLESIL 540
A+S+S+ +LR +F DPLFIR G++ TA L ++ +GLES++
Sbjct: 54 AVSRSLSRLRDVFNDPLFIRTSHGLSATAKTQDLAPLLADTLKGLESLI 102
>UniRef50_A5W6N3 Cluster: Transcriptional regulator, LysR family;
n=7; Pseudomonas|Rep: Transcriptional regulator, LysR
family - Pseudomonas putida F1
Length = 322
Score = 39.5 bits (88), Expect = 0.074
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S ++ +LR +F DPL +R G + P+A A + +Y++ L+++ AL + +D
Sbjct: 55 VSAALARLRAMFNDPLLVRVGNRMEPSARAEEVIKYLTPALDAMSVALSMTHDFD 109
>UniRef50_A4SSQ1 Cluster: Transcriptional regulator, LysR family;
n=2; Aeromonas|Rep: Transcriptional regulator, LysR
family - Aeromonas salmonicida (strain A449)
Length = 322
Score = 39.5 bits (88), Expect = 0.074
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S+++ +LR F DPLF+R G+ PTA A+ + Q L+ IL +LD
Sbjct: 39 AVSKALGRLRETFDDPLFVRSAYGLEPTARAL----VLQQQLQPILLSLD 84
>UniRef50_A1YBP6 Cluster: Amb1; n=2; Sorangium cellulosum|Rep: Amb1
- Polyangium cellulosum (Sorangium cellulosum)
Length = 316
Score = 39.5 bits (88), Expect = 0.074
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLL--RNPPISDAENQLSQFQTDLIIDNMF 334
QRT + T ++ LVLP + + P++ L RN P AE L + + D +
Sbjct: 96 QRTFRLVATDNLELLVLPALTALLAVEAPRVNLRCRNIPADFAE-LLRRGELDGKLGRGG 154
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQE 157
+ +L + +V + R G+P +T R + H+++ P ++ + + + E
Sbjct: 155 PVPDGCRSTLLAAEEIVCVMRRGHPASRGPLTAARYAACEHLMVSPHGEDHGVIDRALAE 214
Query: 156 MFPDRQINFTSYNILTIAALVANSDMLAII 67
R++ T + L +V+ SD+L +
Sbjct: 215 QGLRRRVTLTVSHFLVAPFIVSGSDLLLTV 244
>UniRef50_A1RPU3 Cluster: Transcriptional regulator, LysR family;
n=21; Alteromonadales|Rep: Transcriptional regulator,
LysR family - Shewanella sp. (strain W3-18-1)
Length = 323
Score = 39.5 bits (88), Expect = 0.074
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Frame = -1
Query: 303 LFTDNMVLICREGNPLPL*KMTERLSTT-----AHVLLLPEEQNFSGLRQRVQEMFPDRQ 139
LFTD V + RE +P M+ + + + AHV + E ++ L + ++ R+
Sbjct: 177 LFTDEQVCLIREDHPSMAALMSAQWNLSLYLDMAHVQVRCEGSDWWALDYFLADLGHRRK 236
Query: 138 INFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
I+ T + A++ A+SD++ +P F + +PL+++P P
Sbjct: 237 ISTTVPDFYGAASVCAHSDLIFTLPSSFARHACQLYPLKQIPLP 280
Score = 37.5 bits (83), Expect = 0.30
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S+S+ +LR DPLF R G+ PTA A++L + + L+ +
Sbjct: 39 ALSKSLNRLRETLDDPLFQRTAHGLKPTAHALNLGQKLPNILQDL 83
>UniRef50_Q1N663 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Oceanobacter sp. RED65|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Oceanobacter sp. RED65
Length = 306
Score = 39.1 bits (87), Expect = 0.097
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
AIS ++ +LR DPLF+R+G + PT A L I L + GAL
Sbjct: 33 AISHALSRLRERLDDPLFVRQGHKMRPTPLAQKLIPDIQAALRQLNGAL 81
>UniRef50_A6PC87 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella sediminis HAW-EB3|Rep: Transcriptional
regulator, LysR family - Shewanella sediminis HAW-EB3
Length = 326
Score = 39.1 bits (87), Expect = 0.097
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLH 573
IS+S+Q RVIF +PLFIRK G+ P F L+
Sbjct: 40 ISRSLQHSRVIFNNPLFIRKKHGLIPNEFTKQLY 73
>UniRef50_A4YPA1 Cluster: Putative transcriptional regulator, LysR
family; n=1; Bradyrhizobium sp. ORS278|Rep: Putative
transcriptional regulator, LysR family - Bradyrhizobium
sp. (strain ORS278)
Length = 310
Score = 39.1 bits (87), Expect = 0.097
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -2
Query: 671 SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
S ++++LR + DPLF+R G+ PT A+ L E I L SI L S+D
Sbjct: 44 SHALKRLRALLGDPLFVRTPAGMIPTPHALALAEPIRAILTSIERTLFARASFD 97
>UniRef50_Q5NN80 Cluster: Transcriptional regulator; n=1; Zymomonas
mobilis|Rep: Transcriptional regulator - Zymomonas
mobilis
Length = 316
Score = 38.7 bits (86), Expect = 0.13
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S S+ +LR D LFIR QG+ PT A+ + + +S+G I A E +D
Sbjct: 43 AVSASLSRLRQAAGDLLFIRTRQGMEPTQRAIDMVKSLSEGATLIYNAFISENEFD 98
>UniRef50_A7K0S8 Cluster: Transcriptional regulator; n=7;
Vibrio|Rep: Transcriptional regulator - Vibrio sp. Ex25
Length = 311
Score = 38.7 bits (86), Expect = 0.13
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 671 SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
S+ + KL+ +F DPLF+RK GV P+ A+ L
Sbjct: 40 SRGVMKLKQVFDDPLFVRKAHGVEPSPMAIRL 71
>UniRef50_A6T867 Cluster: Putative bacterial regulatory protein,
LysR; n=1; Klebsiella pneumoniae subsp. pneumoniae MGH
78578|Rep: Putative bacterial regulatory protein, LysR -
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Length = 307
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
AIS ++++LR +F DPLF+R +G+ PT A L + +E++ A+ G +
Sbjct: 42 AISGALKRLREMFDDPLFVRSARGMLPTPRAQALMTDLQPLMENLHSAMFGAGEF 96
>UniRef50_A6F5F0 Cluster: Transcriptional regulator, LysR family
protein; n=1; Marinobacter algicola DG893|Rep:
Transcriptional regulator, LysR family protein -
Marinobacter algicola DG893
Length = 306
Score = 38.7 bits (86), Expect = 0.13
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++ +LR D LF++ G+G+ PT +A+ +I Q L+ +
Sbjct: 39 AVSHTLDRLRQALGDALFVKSGRGIVPTRYALQAGPHIRQILDDL 83
>UniRef50_A6CWQ5 Cluster: Transcriptional regulator, LysR family
protein; n=1; Vibrio shilonii AK1|Rep: Transcriptional
regulator, LysR family protein - Vibrio shilonii AK1
Length = 312
Score = 38.7 bits (86), Expect = 0.13
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHE 570
A+S+ ++KLR F D LFIRK G+ PT + + L E
Sbjct: 39 AVSKQLKKLREEFADELFIRKQYGLEPTPYCLELQE 74
>UniRef50_A5WFF1 Cluster: Transcriptional regulator, LysR family;
n=39; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Psychrobacter sp. PRwf-1
Length = 329
Score = 38.7 bits (86), Expect = 0.13
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S +++LR +F DPL +R +G+TPT A+ L + + L + L+
Sbjct: 36 AMSNILRRLRKLFNDPLLVRSSEGMTPTERALELQPRVREILAELTQLLE 85
>UniRef50_A4BDX8 Cluster: Probable transcriptional regulator; n=1;
Reinekea sp. MED297|Rep: Probable transcriptional
regulator - Reinekea sp. MED297
Length = 94
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
A+S ++ +LR I+ DPLF+R G+ + PT + + Q L+ + L E S +E
Sbjct: 36 AVSNALSRLRTIYDDPLFVRHGKWMRPTLKTEQIIPDVMQALQLLADTLAPETSDQPSE 94
>UniRef50_Q7WJY9 Cluster: Probable LysR-family transcription
regulator; n=1; Bordetella bronchiseptica|Rep: Probable
LysR-family transcription regulator - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 329
Score = 38.3 bits (85), Expect = 0.17
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Frame = -1
Query: 465 LVLPVIYRAIKTHYPQLLL--RNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTD 292
L++P I+R ++ H P + + R P A L + DL I + ++++ LF D
Sbjct: 129 LLMPPIFRHLRAHAPNIRVEVRAPDPERAYELLESGEVDLRIAWLRKPAQSLRSMQLFQD 188
Query: 291 NMVLICREGNP-LPL*KMTERLSTTAHVLLLPEEQNFSG--LRQRVQEMFPDRQINFTSY 121
+V I +P L H +N SG + + V+ + F
Sbjct: 189 RIVCIADRDHPALDGTLSLADFLRYPHARPWGMGRNMSGRVIDEAVELLGKKLAPPFLVQ 248
Query: 120 NILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
N LTI + SD+LA++P F+ P++ L P
Sbjct: 249 NFLTIPYTITGSDLLAVLPLVLARAFAAQQPIQILEVP 286
Score = 33.9 bits (74), Expect = 3.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPT 594
A+S ++ +LR++F DPL +R G+ PT
Sbjct: 55 AVSHALARLRILFDDPLLLRSRAGMVPT 82
>UniRef50_Q7WBR9 Cluster: LysR-family transcriptional regulator;
n=3; Burkholderiales|Rep: LysR-family transcriptional
regulator - Bordetella parapertussis
Length = 318
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+SQ+++KLR F DPLF+R G + PT + + I++ ++ + GS+D
Sbjct: 48 AVSQNLRKLREHFGDPLFVRGGNILQPTPLMLGIRPVIARLIQDLDTLSCPAGSFD 103
>UniRef50_Q489T6 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 309
Score = 38.3 bits (85), Expect = 0.17
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYIS---QGLESIL 540
A+S+++Q+LR +F DPLF R G+ PT A + + Q LESIL
Sbjct: 41 AMSRTLQRLRDLFDDPLFHRTASGIVPTEKAHSIEALLPDLLQKLESIL 89
>UniRef50_Q393C2 Cluster: Transcriptional regulator, LysR family;
n=41; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 297
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
++S +QKLR +F DPL + +G+ PTA A L E + + LE++
Sbjct: 37 SVSVQLQKLRDLFGDPLLLPGPRGMRPTARAEALREPLREALEAV 81
>UniRef50_A6V8B0 Cluster: Transcriptional regulator, LysR family;
n=9; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Pseudomonas aeruginosa PA7
Length = 310
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++ +LR DPLF+R+G+GV PT A L I L +
Sbjct: 43 AVSHALARLREQLGDPLFVRQGRGVAPTPLAERLAPGIRDALAGL 87
>UniRef50_A5IDS9 Cluster: Transcriptional regulator; n=4; Legionella
pneumophila|Rep: Transcriptional regulator - Legionella
pneumophila (strain Corby)
Length = 304
Score = 38.3 bits (85), Expect = 0.17
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGL 552
A+S +++LR IF DPLFIRK G+ PT A+ L I + L
Sbjct: 36 AMSHILKQLRDIFDDPLFIRKPHGLQPTQKALDLAPKIKKFL 77
Score = 34.3 bits (75), Expect = 2.8
Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Frame = -1
Query: 483 TPSVGA---LVLPVIYRAIKTHYPQLLLRNPPISD--AENQLSQFQTDLIIDNMFC-TNR 322
T SVG +LP + + + P+ +L+ +S+ + L + D I F T
Sbjct: 100 TASVGTGEYFILPRLCAHLAKNAPKFVLKISSLSEYLSLEYLLMSELDFAIGPGFVETGN 159
Query: 321 TVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTA-HVLLLPEEQNFSGLRQRVQEMFPD 145
+ +LF + V + + +PL ++T+ + A HV + + + + +
Sbjct: 160 NIIRELLFEEEAVCVMHKSHPLANQELTQDMYLQAEHVDIQFSYMGNENILYKALQGYHQ 219
Query: 144 RQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLE--KLPFP 7
R I NI++ +V +++ + +P+ F + +E LPFP
Sbjct: 220 RNIKVIVPNIISALEVVYHTNFITTVPRTLAVTFKDRYQIELHPLPFP 267
>UniRef50_A4BGW0 Cluster: Probable transcription regulator protein;
n=1; Reinekea sp. MED297|Rep: Probable transcription
regulator protein - Reinekea sp. MED297
Length = 304
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
A+S ++++LR DPLF R+GQ +TPT L + Q L ++ +L G +
Sbjct: 40 AVSHALKRLRDSLDDPLFERRGQQMTPTPVCRRLVPEVLQTLNTLRRSLQSFGEF 94
>UniRef50_A3QHS2 Cluster: Transcriptional regulator, LysR family;
n=2; Shewanella|Rep: Transcriptional regulator, LysR
family - Shewanella loihica (strain BAA-1088 / PV-4)
Length = 324
Score = 38.3 bits (85), Expect = 0.17
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYI 564
+S+ +Q R+IF DPLFIRK G+ P F L+ +
Sbjct: 40 VSRCLQHARMIFNDPLFIRKKHGLEPNEFTRQLYPLV 76
>UniRef50_A1WRT3 Cluster: Transcriptional regulator, LysR family;
n=1; Verminephrobacter eiseniae EF01-2|Rep:
Transcriptional regulator, LysR family -
Verminephrobacter eiseniae (strain EF01-2)
Length = 315
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A++ ++ KLRV F +PLF+R G+ PT +A L I+ L+S+
Sbjct: 36 AVTAALNKLRVHFDNPLFVRTSNGMHPTPWADALAPKIAHVLDSV 80
>UniRef50_Q7P075 Cluster: Transcription regulator protein; n=2;
Betaproteobacteria|Rep: Transcription regulator protein
- Chromobacterium violaceum
Length = 315
Score = 37.9 bits (84), Expect = 0.22
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S+++ +LR DPL +R G+G+ PT A+ L E I L AL
Sbjct: 34 AMSRALARLRATMNDPLLVRAGRGLVPTPRALALRERIGPLLREAEAAL 82
>UniRef50_Q7MCL9 Cluster: Putative transcriptional regulator; n=1;
Vibrio vulnificus YJ016|Rep: Putative transcriptional
regulator - Vibrio vulnificus (strain YJ016)
Length = 313
Score = 37.9 bits (84), Expect = 0.22
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S+S+ KLR +F D LF R+ G++ T F + + ++Q LES L + +++
Sbjct: 39 AVSKSLGKLRELFGDELFTRERHGLSQTPFCIAIMPKVNQLLESFEQLLSNQETFE 94
>UniRef50_Q5NYN4 Cluster: Transcriptional regulator; n=3;
Rhodocyclaceae|Rep: Transcriptional regulator - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 306
Score = 37.9 bits (84), Expect = 0.22
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISD--AENQLSQFQTDLIIDNMFCT 328
T++I T+ ++ A LP + K YP+++ R + E++++ + DL + +
Sbjct: 92 TLSIGTSTTIAAYWLPKLLERFKHKYPRVIPRVVVGNSQLTEDRVAARELDLGLIEIVSE 151
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMFP 148
++ D +++ICR G+PL H + + N +R+ ++ F
Sbjct: 152 QPAIERFTAARDELLVICRPGHPLASKSRLTAHDLLDHAFITRDPGN--AIRELAEQFFA 209
Query: 147 DRQINFTSYNI 115
I N+
Sbjct: 210 AAGIGIDEVNV 220
>UniRef50_Q4ZT12 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=2; Pseudomonas|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Pseudomonas
syringae pv. syringae (strain B728a)
Length = 313
Score = 37.9 bits (84), Expect = 0.22
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCTN 325
ITIA PS+ + VLP + + + +P ++ LR+ + + + + D +
Sbjct: 111 ITIAALPSLCSGVLPTVLKTFRERFPGVEVRLRDVVAQRIDTLVMEREVDFGLGVQARPT 170
Query: 324 RTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMFPD 145
++ + + D + L E +PL + RL+ A V + S +R V+ +F D
Sbjct: 171 HGLEFNAILEDRLCLFAPEDHPLAK-RCAVRLNEIA-VFPIVLTGRESSVRDLVERVFAD 228
Query: 144 RQINFTS---YNIL-TIAALVANSDMLAIIPQ 61
Q+ ++ N + T+ ALV + ++P+
Sbjct: 229 EQLPLSAGLEANYMSTVLALVRQGQGITLLPE 260
>UniRef50_Q46T42 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Ralstonia eutropha JMP134|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 330
Score = 37.9 bits (84), Expect = 0.22
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 4/161 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRN--PPISDAENQLSQFQTDLIIDNMF 334
QRT T+ T + LP + + ++ P LR P+ E L+ DL++ ++
Sbjct: 96 QRTFTLCMTDMGELVFLPPLMKRLRVVAPHCKLRTLQVPVPQIEGLLASGDADLLLGSVQ 155
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQE 157
++ LF V I N +T E+ + HV + + +
Sbjct: 156 TAPESLFRQQLFMHGFVTIVSTKNRQVRDALTIEQFESMPHVTVSLAGRTSPSYDAAFES 215
Query: 156 MFPDRQINFTSYNILTIAALVANS-DMLAIIPQPFYNLFSR 37
R I + + L+I L+ +++A +PQ N+FSR
Sbjct: 216 HGLRRNIYLHTPHFLSIPLLMEQQPELIATVPQELANVFSR 256
Score = 37.5 bits (83), Expect = 0.30
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR F DPLF++ G+TPT A L E + + ++ + + S+D
Sbjct: 36 AMSHALNRLREFFDDPLFVKTAAGMTPTIKAEALSETVLDVMTAMRTRVLPQASFD 91
>UniRef50_Q9RBU0 Cluster: PnbR; n=2; Burkholderiaceae|Rep: PnbR -
Burkholderia pickettii (Ralstonia pickettii)
(Pseudomonas pickettii)
Length = 326
Score = 37.9 bits (84), Expect = 0.22
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIE 522
A+S ++++LR + D LFIR G+G+ PT AM + + L I L E
Sbjct: 36 AVSHALRRLRELVGDELFIRMGKGMVPTGRAMAMAPTLLDSLRRIENTLGAE 87
>UniRef50_Q0ARX0 Cluster: Transcriptional regulator, LysR family;
n=1; Maricaulis maris MCS10|Rep: Transcriptional
regulator, LysR family - Maricaulis maris (strain MCS10)
Length = 334
Score = 37.9 bits (84), Expect = 0.22
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
+S ++ +LR+ F D LF+R +G+ PT + + + + L I ALD ++D+ +
Sbjct: 40 VSNALSRLRLAFGDQLFLRAPRGIEPTERCSEIIKDVREALRHIEQALDSGPAFDAKQ 97
>UniRef50_A6P8I1 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella sediminis HAW-EB3|Rep: Transcriptional
regulator, LysR family - Shewanella sediminis HAW-EB3
Length = 300
Score = 37.9 bits (84), Expect = 0.22
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
++S +I + + + + LF+R G+ + PTA A +L+E ++ +I
Sbjct: 37 SVSNAISRFKAVIGEELFVRSGRNIKPTAMANYLYEQLNDSFSNI 81
>UniRef50_A0GQF0 Cluster: Transcriptional regulator, LysR family;
n=2; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Burkholderia phytofirmans PsJN
Length = 325
Score = 37.9 bits (84), Expect = 0.22
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLL-RNPPISDAE-NQLSQFQTDLII------D 343
+ I + A ++P ++K YPQL + SD +L++ + D++I
Sbjct: 106 VRIGVIAAAAATMVPRAIASVKERYPQLQIWAEVETSDVMLPRLAEGELDIMIGRVLERQ 165
Query: 342 NMFCTNRTVQHHVLFTDNMVLICREGNPLPL*K-MTERLSTTAHVLLLPEEQNFSGLRQR 166
N F T V++ L + + ++ R G+ L +T R A +L P S LR R
Sbjct: 166 NQFKTE--VRYEPLADEPLCVVARPGHHLENETGLTLRGIVNASWVLHPPG---SVLRHR 220
Query: 165 VQEMFPDRQIN-----FTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLP 13
MF +N + N L I++L+ SDMLA++P + + L+++P
Sbjct: 221 FDLMFSQIGLNPPQNVVNTNNFLAISSLLLQSDMLAVLPDEVARQYQQYGVLKRIP 276
>UniRef50_Q8NTT1 Cluster: Transcriptional regulator; n=1;
Corynebacterium glutamicum|Rep: Transcriptional
regulator - Corynebacterium glutamicum (Brevibacterium
flavum)
Length = 254
Score = 37.5 bits (83), Expect = 0.30
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S I KL + LF R QGVTPT+F +H+ I + L I
Sbjct: 35 ALSNGIAKLEDRLGEQLFDRSTQGVTPTSFGLHILPLIQRALTEI 79
>UniRef50_Q8DDK3 Cluster: Transcriptional regulator; n=22;
Gammaproteobacteria|Rep: Transcriptional regulator -
Vibrio vulnificus
Length = 321
Score = 37.5 bits (83), Expect = 0.30
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S+ + +LR + DPLF R+GQ + PT A+ + + + LES+
Sbjct: 47 AMSRVLGRLRDLLGDPLFTREGQHLLPTEKALEIDRALGEPLESL 91
>UniRef50_Q8D5G7 Cluster: Transcriptional regulator; n=1; Vibrio
vulnificus|Rep: Transcriptional regulator - Vibrio
vulnificus
Length = 318
Score = 37.5 bits (83), Expect = 0.30
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S+ + KLR F D LFIRK GV P+ A L E + IL ++ S++
Sbjct: 37 SVSRGMAKLRETFGDGLFIRKAHGVEPSELAEKLAEAAEEMFNPILKVVESYQSFE 92
>UniRef50_Q47ZG5 Cluster: Transcriptional regulator, LysR family;
n=2; Alteromonadales|Rep: Transcriptional regulator,
LysR family - Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) (Vibriopsychroerythus)
Length = 299
Score = 37.5 bits (83), Expect = 0.30
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
AIS+ ++K+R F D +FIR GV PT A + ++Q L I
Sbjct: 37 AISEQLKKIRHSFDDEMFIRTSNGVIPTQVAERMEHRVNQILADI 81
>UniRef50_Q1GIZ4 Cluster: Transcriptional regulator LysR family;
n=1; Silicibacter sp. TM1040|Rep: Transcriptional
regulator LysR family - Silicibacter sp. (strain TM1040)
Length = 317
Score = 37.5 bits (83), Expect = 0.30
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
IS +I+KLR + D LF++ G+G+ P+A A L + + L + G D +G YD
Sbjct: 40 ISHNIEKLRGLLGDALFVQSGRGIVPSARADVLAPKVRRILIEMEGLAD-QGIYD 93
>UniRef50_Q16B23 Cluster: Transcriptional regulator, LysR family,
putative; n=1; Roseobacter denitrificans OCh 114|Rep:
Transcriptional regulator, LysR family, putative -
Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
(Erythrobactersp. (strain OCh 114)) (Roseobacter
denitrificans)
Length = 304
Score = 37.5 bits (83), Expect = 0.30
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
IS S++KLR DPLF++ G+G+ PT A L + + + + G L ++ Y
Sbjct: 40 ISHSLEKLRHCVGDPLFVKSGRGIAPTNVAAALAPKVCRIISELEG-LAMQSEY 92
>UniRef50_A6X639 Cluster: Transcriptional regulator, LysR family;
n=1; Ochrobactrum anthropi ATCC 49188|Rep:
Transcriptional regulator, LysR family - Ochrobactrum
anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
Length = 324
Score = 37.5 bits (83), Expect = 0.30
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S ++ KLR I D LF+R QG+ PT A L + + L I AL
Sbjct: 37 AVSHALGKLRYILSDELFVRGPQGMHPTPRAEELSQPLRSALADISAAL 85
>UniRef50_A6TAT5 Cluster: Putative transcriptional regulator; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative transcriptional regulator - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 299
Score = 37.5 bits (83), Expect = 0.30
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLLR--NPPISDAENQLSQFQTDLIIDNMFCTN 325
+T+AT PS +P I R+ + YPQ+ +R + + + +S Q D +
Sbjct: 97 VTVATVPSAAYYFMPEIIRSFQARYPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLP 156
Query: 324 RTVQHHVLFTDNMVLICREGNPL 256
+++ L D V CR +PL
Sbjct: 157 ASIEFTPLADDRYVAACRHDHPL 179
>UniRef50_A6E2S9 Cluster: Transcriptional regulator, LysR family
protein; n=1; Roseovarius sp. TM1035|Rep:
Transcriptional regulator, LysR family protein -
Roseovarius sp. TM1035
Length = 301
Score = 37.5 bits (83), Expect = 0.30
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCTN 325
+ IA PSV AL+LP I ++ P ++ L + + L + TDL + +
Sbjct: 93 LRIAAVPSVAALILPAILKSFVEARPEAEIDLYDTDSASVREMLLRGDTDLGLASPAAEP 152
Query: 324 RTVQHHVLFTDNMVLICREGNPL 256
++ LFTD +V +C +PL
Sbjct: 153 DGLRAIPLFTDALVFVCNAAHPL 175
>UniRef50_A5WDE8 Cluster: Transcriptional regulator, LysR family;
n=1; Psychrobacter sp. PRwf-1|Rep: Transcriptional
regulator, LysR family - Psychrobacter sp. PRwf-1
Length = 302
Score = 37.5 bits (83), Expect = 0.30
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A S + KLR F DPLF+R G + PT A +L ++ L+ I D
Sbjct: 34 AASLGLNKLRQHFDDPLFVRVGNQMQPTQTAQNLFPLVNNALQHIRAVND 83
>UniRef50_A4EYL1 Cluster: Transcriptional regulator, LysR family
protein; n=1; Roseobacter sp. SK209-2-6|Rep:
Transcriptional regulator, LysR family protein -
Roseobacter sp. SK209-2-6
Length = 324
Score = 37.5 bits (83), Expect = 0.30
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
IS +I++LR I DPLF++ G+G+ P+ A L I L + D +G YD
Sbjct: 40 ISHNIERLRSILGDPLFLQAGRGIVPSERAEFLAPKIRHLLTDLESLADNDG-YD 93
>UniRef50_A4B7L6 Cluster: Transcriptional regulator; n=1;
Alteromonas macleodii 'Deep ecotype'|Rep:
Transcriptional regulator - Alteromonas macleodii 'Deep
ecotype'
Length = 356
Score = 37.5 bits (83), Expect = 0.30
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYI 564
A+S ++ ++R + D LF++ G+G+ PT+FA +L I
Sbjct: 34 AVSNALSRMRTAWNDELFVKDGRGIQPTSFAKNLWSQI 71
>UniRef50_Q08812 Cluster: HTH-type transcriptional regulator syrM;
n=6; Rhizobiaceae|Rep: HTH-type transcriptional
regulator syrM - Rhizobium etli
Length = 336
Score = 37.5 bits (83), Expect = 0.30
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 4/170 (2%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQL-LLRNPPISDAENQLSQFQTDLIIDNMFCT 328
R T+A VLP + ++ P L L P A L Q DL + ++
Sbjct: 131 RGATLAIPDHQALAVLPRLLPWLRERAPHLDTLACLPFDRAVRGLEQGDIDLAVGHIDVQ 190
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEE-QNFSGLRQRVQEM 154
L+TD + R G+P + T + +T H + + +F + + +
Sbjct: 191 LPGYFRRSLYTDRFACLLRHGHPALAQEWTIDNFATLRHAAISTDSPDHFGPIYDHLPNL 250
Query: 153 FPDRQ-INFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
DR I F+S +LT A + + +D++ ++P+ S PL + P
Sbjct: 251 RADRSPILFSS--VLTAAVVASATDLVLLVPRRVATQVSAMLPLRVVDPP 298
>UniRef50_Q15UP0 Cluster: Transcriptional regulator, LysR family;
n=3; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Pseudoalteromonas atlantica (strain T6c /
BAA-1087)
Length = 305
Score = 37.1 bits (82), Expect = 0.39
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S S+ +LR + DPLF+R G +TPT A ++
Sbjct: 36 AVSNSLARLREMLNDPLFVRTGHSMTPTPAAQNI 69
>UniRef50_A5KW47 Cluster: Transcriptional regulator, LysR family
protein; n=1; Vibrionales bacterium SWAT-3|Rep:
Transcriptional regulator, LysR family protein -
Vibrionales bacterium SWAT-3
Length = 297
Score = 37.1 bits (82), Expect = 0.39
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
AIS S+ +L+ LF R G+GV PT FA L+E + L I
Sbjct: 35 AISNSLNRLKSSLGQELFNRTGRGVKPTRFAQELYEQLQFSLMEI 79
Score = 33.5 bits (73), Expect = 4.8
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = -1
Query: 357 DLIIDNMFCTNRTVQHHVLFTDNMVLICREGNP-LPL*KMT-ERLSTTAHVLLLPEEQNF 184
DL+ID Q VL + + I R +P + L + E H L N
Sbjct: 146 DLVIDISRPQGAMFQSSVLREEQLCCIVRHNHPRMNLESINKESYLQERHALFDLTRLNL 205
Query: 183 SGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
+ E+ P R+ ++L + V+ SD + ++P + + + L+ LPFP
Sbjct: 206 KFVDWITDEVLPQRKAYSEHKSLLGMIEAVSYSDAVGVVPLSVAKRYQKAFNLDLLPFP 264
>UniRef50_A3XZ21 Cluster: Putative LysR-type regulator; n=1; Vibrio
sp. MED222|Rep: Putative LysR-type regulator - Vibrio
sp. MED222
Length = 304
Score = 37.1 bits (82), Expect = 0.39
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AIS+++ +L+ + DPLF++ +G P++F ++ I Q ++ + +D
Sbjct: 34 AISKALNRLKETYDDPLFVKTKEGYRPSSFCYDIYPQIKQAYDAFESTFPSKRKFD 89
>UniRef50_A0HDG7 Cluster: Transcriptional regulator, LysR family;
n=1; Comamonas testosteroni KF-1|Rep: Transcriptional
regulator, LysR family - Comamonas testosteroni KF-1
Length = 296
Score = 37.1 bits (82), Expect = 0.39
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLLR--NPPISDAENQLSQFQTDLIIDNMFCTN 325
+TIA PSV V+ IK +P++ LR + P +D +++ + D I + +
Sbjct: 95 VTIACIPSVVDTVVASAIHQIKKQFPRIRLRILDQPAADILLTVARSEVDFGIGYLGASE 154
Query: 324 RTVQHHVLFTDNMVLICREGNPL 256
+ L +++ VL CR+ +PL
Sbjct: 155 PDLDFEELASESFVLACRKDHPL 177
>UniRef50_Q89SR8 Cluster: Transcriptional regulatory protein; n=1;
Bradyrhizobium japonicum|Rep: Transcriptional regulatory
protein - Bradyrhizobium japonicum
Length = 322
Score = 36.7 bits (81), Expect = 0.52
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S S+ KLR I DPLF + G+G+ TA A L
Sbjct: 55 AVSHSLNKLRRIAGDPLFAKSGRGIVATAHAQAL 88
>UniRef50_Q5LN55 Cluster: Transcriptional regulator, LysR family;
n=4; Rhodobacterales|Rep: Transcriptional regulator,
LysR family - Silicibacter pomeroyi
Length = 331
Score = 36.7 bits (81), Expect = 0.52
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLH 573
A+S ++ +LR DPLFIR+G+ + PT +A LH
Sbjct: 36 AVSAALSRLRHALGDPLFIRQGRQLVPTDYAGGLH 70
>UniRef50_Q39GR6 Cluster: Transcriptional regulator, LysR family;
n=2; Betaproteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 309
Score = 36.7 bits (81), Expect = 0.52
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSY 513
AIS IQ+L PLF R+G+GV T L + + ++++ G LD +Y
Sbjct: 35 AISHQIQQLEAQLGQPLFRRRGRGVELTIAGEVLQRSVQRAMDTLRGGLDRIATY 89
>UniRef50_Q2BJ61 Cluster: Transcriptional regulator, LysR family
protein; n=1; Neptuniibacter caesariensis|Rep:
Transcriptional regulator, LysR family protein -
Neptuniibacter caesariensis
Length = 302
Score = 36.7 bits (81), Expect = 0.52
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIE 522
A+S+++Q+LR DP+ +R G G +A A+ L E +S L + + E
Sbjct: 36 AVSRALQRLRTTLQDPILVRTGSGYDLSARAVVLREQLSHVLHEVQAIMQPE 87
>UniRef50_Q12EW0 Cluster: Transcriptional regulator, LysR family;
n=18; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 298
Score = 36.7 bits (81), Expect = 0.52
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQ 558
A+S+++ +LR DPL +R G+G+ PT A+ L E + Q
Sbjct: 34 AMSRALARLRETTGDPLLVRAGRGLVPTPRAIALREQVGQ 73
>UniRef50_A7CJC1 Cluster: Transcriptional regulator, LysR family;
n=2; Ralstonia pickettii|Rep: Transcriptional regulator,
LysR family - Ralstonia pickettii 12D
Length = 449
Score = 36.7 bits (81), Expect = 0.52
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER* 495
+S ++ KLR F DPLF+R +G+ PT A+ L L + + G++D
Sbjct: 162 VSTALGKLRAAFDDPLFVRTSRGMEPTPRALALIPAARDVLARVQEGILETGAFD----- 216
Query: 494 LLRPLPRSEHWSF-LSSIGRLKLTIRSFYCATRPSATRKTNSVSFKP 357
P + +S LS +G + R R + SVS P
Sbjct: 217 ---PATTTHTFSISLSDVGEMVFLPRIVEAMARHAPRASVQSVSLPP 260
>UniRef50_A6E126 Cluster: Transcriptional regulator, LysR family
protein; n=1; Roseovarius sp. TM1035|Rep:
Transcriptional regulator, LysR family protein -
Roseovarius sp. TM1035
Length = 293
Score = 36.7 bits (81), Expect = 0.52
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S ++ +LRV DPLF+R+G+ + PT +A L
Sbjct: 36 AVSSALGRLRVALNDPLFLREGRHLVPTDYAQSL 69
>UniRef50_A6AKJ3 Cluster: Transcriptional regulator, LysR family;
n=2; Vibrio harveyi|Rep: Transcriptional regulator, LysR
family - Vibrio harveyi HY01
Length = 318
Score = 36.7 bits (81), Expect = 0.52
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S+++ +LR I D LF R G + PT FA+++ + G+ S + L +GS++
Sbjct: 39 SVSKTLSQLRDILKDDLFYRDGTRLVPTPFALNIGPSV-HGILSSMNGLLYQGSFN 93
>UniRef50_A4Z170 Cluster: Putative transcriptional regulatory
protein, LysR-family; n=1; Bradyrhizobium sp.
ORS278|Rep: Putative transcriptional regulatory protein,
LysR-family - Bradyrhizobium sp. (strain ORS278)
Length = 313
Score = 36.7 bits (81), Expect = 0.52
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -2
Query: 671 SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
S+++ +LR +F DPLF+R G+ PT A+ L I+ LE + + E +D
Sbjct: 44 SKALDRLRHLFGDPLFLRAPGGMRPTPRALELAPEIALVLERVRALVAAELPFD 97
>UniRef50_A3X6E2 Cluster: Transcriptional regulatory protein; n=1;
Roseobacter sp. MED193|Rep: Transcriptional regulatory
protein - Roseobacter sp. MED193
Length = 303
Score = 36.7 bits (81), Expect = 0.52
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPT 594
IS ++ +LR +F DPLF+R+G G+ PT
Sbjct: 39 ISYTMTRLREVFSDPLFVRQGTGMVPT 65
>UniRef50_A0VV67 Cluster: Transcriptional regulator, LysR family;
n=1; Dinoroseobacter shibae DFL 12|Rep: Transcriptional
regulator, LysR family - Dinoroseobacter shibae DFL 12
Length = 304
Score = 36.7 bits (81), Expect = 0.52
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEY---ISQGLESILGALDIEG 519
A+SQ +QKL PLF R +G+ PT + +E+ I++ L++ L AL +G
Sbjct: 31 ALSQQLQKLEAEIGQPLFTRAPKGMIPTQAGIEAYEHFVRITRDLDTALNALSGDG 86
>UniRef50_A0KIB7 Cluster: Transcriptional regulator, LysR family;
n=2; Aeromonas|Rep: Transcriptional regulator, LysR
family - Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240)
Length = 303
Score = 36.7 bits (81), Expect = 0.52
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFA 585
A+S+++ +LR+++ DPL IR QG+ PTA A
Sbjct: 36 AVSRALARLRLLYDDPLLIRTPQGMEPTARA 66
>UniRef50_A0IIW1 Cluster: Transcriptional regulator, LysR family;
n=6; Enterobacteriaceae|Rep: Transcriptional regulator,
LysR family - Serratia proteamaculans 568
Length = 300
Score = 36.7 bits (81), Expect = 0.52
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S ++ +LR + +PLF R+G PT FA+ L E ++ ++ G L
Sbjct: 36 AVSHALARLREVLNEPLFRREGHRQVPTLFALSLKEKLTPLFSALDGEL 84
>UniRef50_Q98E29 Cluster: Transcriptional regulator; n=2;
Proteobacteria|Rep: Transcriptional regulator -
Rhizobium loti (Mesorhizobium loti)
Length = 304
Score = 36.3 bits (80), Expect = 0.69
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRK--GQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S + +LR +F DPL + G+G+TPTA A+ L + + L+ + L E +D
Sbjct: 36 ALSAQLGRLRHLFDDPLLVPAIVGRGMTPTARALPLRDSLKAALKGLEVVLAREHPFD 93
>UniRef50_Q8EAM4 Cluster: Transcriptional regulator, LysR family;
n=2; Shewanella|Rep: Transcriptional regulator, LysR
family - Shewanella oneidensis
Length = 323
Score = 36.3 bits (80), Expect = 0.69
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPT 594
+IS +++LRVIF D +FIR G+G+ PT
Sbjct: 40 SISYHLRRLRVIFADEMFIRTGKGLKPT 67
>UniRef50_Q6MJZ8 Cluster: Transcriptional regulator, LysR family;
n=1; Bdellovibrio bacteriovorus|Rep: Transcriptional
regulator, LysR family - Bdellovibrio bacteriovorus
Length = 318
Score = 36.3 bits (80), Expect = 0.69
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAE--NQLSQFQTDLIIDNMFCTN 325
+ I P++ +LP+ + IK + +L L + ++ DL I +
Sbjct: 93 LRIGIIPTLAPYLLPLFLKKIKDAHSRLHLTFEELQTEVMIEKIRNHSLDLGIVVTPIDD 152
Query: 324 RTVQHHVLFTDNMVLICREGNPLPL*K-MTERLSTTAHVLLLPE-----EQNFSGLRQRV 163
+ +HVLF + + +G+PL K + E+ ++ VLLL E EQ+ S R +
Sbjct: 153 LNIANHVLFYEPFNVYLSKGHPLLTQKTLDEKDLSSEDVLLLNEGHCFREQSLSLCRNKK 212
Query: 162 QEMFPDRQINFTSYNILTIAALVANSDMLAIIP 64
+R +F S ++ T+ LV + ++P
Sbjct: 213 VPAAMERSFSFESGSLETLKKLVDQGESFTLLP 245
>UniRef50_Q5P743 Cluster: Transcriptional regulator, LysR family;
n=2; Azoarcus|Rep: Transcriptional regulator, LysR
family - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 301
Score = 36.3 bits (80), Expect = 0.69
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ KLR F DPLF+R G+ PT L E I + ++ A +D
Sbjct: 34 AVSIALGKLREHFGDPLFVRTSAGMEPTPLGEELAEPIRVAVAAVSAASGHRAEFD 89
>UniRef50_Q5LNL1 Cluster: Transcriptional regulator, LysR family;
n=1; Silicibacter pomeroyi|Rep: Transcriptional
regulator, LysR family - Silicibacter pomeroyi
Length = 290
Score = 36.3 bits (80), Expect = 0.69
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMF 334
Q + +A+ PS L LP + +P +L LR+ + L Q Q DL I +
Sbjct: 90 QGLLRVASIPSASGLALPGAIETMMQRHPALELELRDMDTGRVVDALLQGQADLGIVSGQ 149
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPL 256
V+ LF D L+C G+PL
Sbjct: 150 PVLNGVESETLFEDAFGLLCATGHPL 175
>UniRef50_Q481E9 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 264
Score = 36.3 bits (80), Expect = 0.69
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIE 522
+S+ + KLR DPLF+R G+ PT++A + + + L + AL+ E
Sbjct: 35 VSKVLSKLREDIGDPLFVRTATGLEPTSYANIIAPKVKEALAQMHSALEPE 85
>UniRef50_Q471I4 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Ralstonia eutropha JMP134|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 323
Score = 36.3 bits (80), Expect = 0.69
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S+++ +LR F DPLF+R G + PT A+ L + + L+S+
Sbjct: 42 ALSKTLARLRQYFGDPLFVRVGLRMEPTPKALELADPVRGILQSV 86
>UniRef50_Q2CCM2 Cluster: Transcriptional regulator, LysR family
protein; n=1; Oceanicola granulosus HTCC2516|Rep:
Transcriptional regulator, LysR family protein -
Oceanicola granulosus HTCC2516
Length = 313
Score = 36.3 bits (80), Expect = 0.69
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++ +LR D LF+R+GQG+ T FA L + + L+ + L +D
Sbjct: 36 AVSAALGRLRAALGDELFLRRGQGLVATDFARALEAPLRETLDRLEDLLAAPQEFD 91
>UniRef50_A6VUM5 Cluster: Transcriptional regulator, LysR family;
n=3; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Marinomonas sp. MWYL1
Length = 306
Score = 36.3 bits (80), Expect = 0.69
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYPQ--LLLRNPPISDAENQLSQFQTDLIIDNMFCT 328
T+T++ PS+ LP I T +PQ + L + + + Q DL +
Sbjct: 94 TLTLSVLPSLAVEWLPEILAQYSTMHPQTQIKLNDTQWNQCLKSIVNSQADLALTASQPA 153
Query: 327 NRTVQHHVLFTDNMVLICREGNPL 256
H LF+D L+C +PL
Sbjct: 154 TNIFDSHYLFSDKFYLLCHVNHPL 177
>UniRef50_A6FDU8 Cluster: Transcriptional regulator, LysR family
protein; n=1; Moritella sp. PE36|Rep: Transcriptional
regulator, LysR family protein - Moritella sp. PE36
Length = 280
Score = 36.3 bits (80), Expect = 0.69
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
AIS +I++L PLFIR G+ ++PT A + + +S LE + AL
Sbjct: 34 AISGAIKRLETYLGYPLFIRSGRKLSPTPNAQNFYSQVSTVLEIVDNAL 82
Score = 35.9 bits (79), Expect = 0.91
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Frame = -1
Query: 429 HYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL 250
H QL+ + D N L + DL IDN+ + + ++ +++ L+C + +P
Sbjct: 104 HDIQLIESSDSEEDTFNDLRMRKIDLAIDNVTQQDNSFCFELVRKEHLKLVCCKNHPTVT 163
Query: 249 *KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLA 73
+T E HV + N + + R I + + V NSD +A
Sbjct: 164 DSITMEHYLQLGHVAMKLVRNNMRAVEYFAKTALKARDIRVQVSSPANMMLAVQNSDYIA 223
Query: 72 IIPQ 61
IP+
Sbjct: 224 AIPE 227
>UniRef50_A5VCH0 Cluster: Transcriptional regulator, LysR family;
n=1; Sphingomonas wittichii RW1|Rep: Transcriptional
regulator, LysR family - Sphingomonas wittichii RW1
Length = 327
Score = 36.3 bits (80), Expect = 0.69
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+S S+ +LR I D LF+R +G+ PT A+ L I + L I AL+
Sbjct: 39 AVSHSLNRLRHILKDDLFLRGAKGMNPTPKALALAVPIRRALVDIQQALN 88
>UniRef50_A1B755 Cluster: Transcriptional regulator, LysR family;
n=1; Paracoccus denitrificans PD1222|Rep:
Transcriptional regulator, LysR family - Paracoccus
denitrificans (strain Pd 1222)
Length = 421
Score = 36.3 bits (80), Expect = 0.69
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLLR--NPPISDAENQLSQFQTDLIIDNMFCTN 325
+ I T P G+ L R + YP +R N LS + D+I +
Sbjct: 200 LVIGTLPMAGSHDLAEATRRFMSAYPSTKVRLVTGEYHKLLNDLSNSRIDMIFGMLRRPE 259
Query: 324 RT--VQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
V VLFTDN L+ R G+ L + + ++P Q + R R++++F
Sbjct: 260 WADDVSEEVLFTDNYCLVARVGHALTRLENVTPSDLAGYEWVVP--QKGTPRRNRIEQIF 317
Query: 150 PDRQI----NFTSYNILTIAALVANSDMLAII 67
D + + + ++ I +L+ NS+ + ++
Sbjct: 318 ADEPVRPKFHLETSSLTMIRSLLLNSETVTLM 349
>UniRef50_Q88LJ0 Cluster: Transcriptional regulator, LysR family;
n=1; Pseudomonas putida KT2440|Rep: Transcriptional
regulator, LysR family - Pseudomonas putida (strain
KT2440)
Length = 320
Score = 35.9 bits (79), Expect = 0.91
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -2
Query: 671 SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
S S+++LR F D LF+ G+G+ PT F + + +S LE I
Sbjct: 38 SASLRRLREYFEDQLFLSTGRGMRPTPFTVSIAASVSGVLERI 80
>UniRef50_Q6FFS4 Cluster: Putative transcriptional regulator
DNA-binding,transcriptional regulator; n=2;
Acinetobacter|Rep: Putative transcriptional regulator
DNA-binding,transcriptional regulator - Acinetobacter
sp. (strain ADP1)
Length = 299
Score = 35.9 bits (79), Expect = 0.91
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER* 495
IS + K+R F DPLF+R G + PT + + IS+ + + + ++D ++
Sbjct: 35 ISNGLIKIRQHFGDPLFLRVGNEMIPTELSKQIFPLISEVINKVESINNFSVNFDPSKSD 94
Query: 494 LLRPLPRSE 468
LL L ++
Sbjct: 95 LLYTLAMTD 103
>UniRef50_Q5E0V6 Cluster: Transcriptional regulator; n=1; Vibrio
fischeri ES114|Rep: Transcriptional regulator - Vibrio
fischeri (strain ATCC 700601 / ES114)
Length = 191
Score = 35.9 bits (79), Expect = 0.91
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER 498
++S +I++L+ + LF R G+G+ TAF H E + S++ ++I G D E
Sbjct: 38 SVSNAIRRLKKALGNELFTRSGRGIEMTAFGKHFFESVE---PSVMSLVNIIGRDDRFE- 93
Query: 497 *LLRPLPRSEH---WSFLSSIGRLKLTIRSFYCATRPSATRK 381
PL S + ++ S++ RL++ +R + + T K
Sbjct: 94 ----PLTSSRNFIVYALESALPRLQIRLRELLKDSNITVTLK 131
>UniRef50_Q1MJF9 Cluster: Putative LysR family transcriptional
regulator; n=1; Rhizobium leguminosarum bv. viciae
3841|Rep: Putative LysR family transcriptional regulator
- Rhizobium leguminosarum bv. viciae (strain 3841)
Length = 320
Score = 35.9 bits (79), Expect = 0.91
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S ++++LR D LF+R G+G+ PT A+ + I L I A+ + +D
Sbjct: 41 LSAALRRLREALDDELFVRVGRGLQPTPRALSIAPAIEDALSGIERAIRPQAEFD 95
>UniRef50_A6PEH3 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella sediminis HAW-EB3|Rep: Transcriptional
regulator, LysR family - Shewanella sediminis HAW-EB3
Length = 301
Score = 35.9 bits (79), Expect = 0.91
Identities = 26/106 (24%), Positives = 46/106 (43%)
Frame = -1
Query: 330 TNRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMF 151
TN+ + L D +LI R+G+PL +TE L+ V +P S +++
Sbjct: 157 TNKVLYQRDLGYDKFMLIMRKGHPLQDNTLTEVLNYPICVNTIPGYTEPSKAEMLIKKYD 216
Query: 150 PDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLP 13
D IN ++ + LV +SD + + + + + E LP
Sbjct: 217 LDGHINLRCSDMSMMLKLVKDSDFICVATEKCATVLGNDYRYEALP 262
>UniRef50_A4W5X5 Cluster: Transcriptional regulator, LysR family;
n=1; Enterobacter sp. 638|Rep: Transcriptional
regulator, LysR family - Enterobacter sp. 638
Length = 99
Score = 35.9 bits (79), Expect = 0.91
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI---LGALDIE 522
A+S ++++ +F +PLFIRKG + PT A+ L + Q + I +GA++ E
Sbjct: 41 AVSLALKRFNQLFDEPLFIRKGLYLEPTKKALELTHSLEQLMADIHHNIGAVNAE 95
>UniRef50_A4SYM5 Cluster: Transcriptional regulator, LysR family;
n=1; Polynucleobacter sp. QLW-P1DMWA-1|Rep:
Transcriptional regulator, LysR family -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 311
Score = 35.9 bits (79), Expect = 0.91
Identities = 32/153 (20%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYPQL--LLRNPPISDAENQLSQFQTDLIIDNMFCT 328
TI + P++ +LP++ ++ +P L LR ++ +++++ + D + +
Sbjct: 96 TIRLGVIPTIAPFLLPIVLPEVRKRFPDLKITLREDLTANLLSRMAEHKLDFALIALPYD 155
Query: 327 NRTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMFP 148
+ LF D+ L+ R G+P K + A LLL EE + LR+ +
Sbjct: 156 TSGLLVEELFDDDFWLVARAGDPALKGKEVTLPAKMAERLLLLEEGHC--LREHSLQACK 213
Query: 147 DRQI----NFTSYNILTIAALVANSDMLAIIPQ 61
I + ++LT+ +V + +A++P+
Sbjct: 214 KADIRKAEGMEATSLLTLLQMVESGLGIALLPE 246
>UniRef50_A3RPR5 Cluster: Transcriptional regulators, LysR family;
n=5; Proteobacteria|Rep: Transcriptional regulators,
LysR family - Ralstonia solanacearum UW551
Length = 321
Score = 35.9 bits (79), Expect = 0.91
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S + +LR F DPLF+R +GV PT A+ L + Q L +
Sbjct: 37 AMSGMLTRLRESFDDPLFVRTQRGVVPTQRALELAGPVKQVLGEV 81
>UniRef50_A1JMX6 Cluster: Putative LysR-family transcriptional
regulatory protein; n=1; Yersinia enterocolitica subsp.
enterocolitica 8081|Rep: Putative LysR-family
transcriptional regulatory protein - Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
Length = 315
Score = 35.9 bits (79), Expect = 0.91
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
A+S + KLR + DP+ R G G+ PTA + L++ LE
Sbjct: 35 AVSVVLNKLRRHYNDPIMFRGGAGMQPTALTLELYKIFKPALE 77
>UniRef50_A0JW61 Cluster: Transcriptional regulator, LysR family;
n=1; Arthrobacter sp. FB24|Rep: Transcriptional
regulator, LysR family - Arthrobacter sp. (strain FB24)
Length = 295
Score = 35.9 bits (79), Expect = 0.91
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S ++ +LR DPLF R G+TPT A+ L L +I A+D +D
Sbjct: 34 SVSHALSRLRRQLGDPLFTRGAGGMTPTRVAVELFSTFKASLNAIDLAIDGTRDFD 89
>UniRef50_Q8ZS13 Cluster: Putative LysR family transcriptional
regulator; n=4; Salmonella|Rep: Putative LysR family
transcriptional regulator - Salmonella typhimurium
Length = 315
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A+S ++++L+ +P+ LF R G+ PTA A+ +H+ SQ ++ +
Sbjct: 40 AVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLV 84
>UniRef50_Q8D5M9 Cluster: Transcriptional regulator; n=3;
Vibrio|Rep: Transcriptional regulator - Vibrio
vulnificus
Length = 261
Score = 35.5 bits (78), Expect = 1.2
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
+S+ + +LR DPLF+R+ G+ PT +A + I LE I AL
Sbjct: 20 VSKVLAQLREELADPLFLRESSGLVPTDYANAIEPKIRIALEQIDSAL 67
>UniRef50_Q7CTM2 Cluster: AGR_L_1856p; n=2; Agrobacterium
tumefaciens str. C58|Rep: AGR_L_1856p - Agrobacterium
tumefaciens (strain C58 / ATCC 33970)
Length = 515
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
++S+ +Q+LR + D LF+R GQG+ PT FA ++
Sbjct: 76 SMSRILQQLREKYGDQLFLRTGQGLRPTPFAENM 109
>UniRef50_Q1ZAV3 Cluster: Transcriptional regulators, LysR family
protein; n=2; Vibrionaceae|Rep: Transcriptional
regulators, LysR family protein - Photobacterium
profundum 3TCK
Length = 283
Score = 35.5 bits (78), Expect = 1.2
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S ++++L + PLF+R+G+G++PT A+ L
Sbjct: 31 AVSAALKRLESVIGKPLFVREGRGISPTGAAVAL 64
>UniRef50_A6GE91 Cluster: Probable transcription regulator protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Probable
transcription regulator protein - Plesiocystis pacifica
SIR-1
Length = 305
Score = 35.5 bits (78), Expect = 1.2
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSN 504
A+S ++++LR D L +R+G + PTA+A L E ++ L + AL +D++
Sbjct: 37 AMSAALRRLRAALGDELLLRQGHQMIPTAYAESLVEPLTDALGQLEVALFQRAGFDAS 94
>UniRef50_A4AX23 Cluster: Transcriptional regulator, LysR family
protein; n=1; Alteromonas macleodii 'Deep ecotype'|Rep:
Transcriptional regulator, LysR family protein -
Alteromonas macleodii 'Deep ecotype'
Length = 311
Score = 35.5 bits (78), Expect = 1.2
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S ++++ R I DPLF+++ Q + PTA L I + L I AL
Sbjct: 44 AVSHAMRRFRDILGDPLFVKEKQSMLPTAACERLAPAILKALNDIRKAL 92
>UniRef50_Q8ZKY0 Cluster: HTH-type transcriptional regulator yidZ;
n=39; Gammaproteobacteria|Rep: HTH-type transcriptional
regulator yidZ - Salmonella typhimurium
Length = 319
Score = 35.5 bits (78), Expect = 1.2
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
A+S+S+ KLR F DPLF+ G+ PT + + + ++ ++
Sbjct: 38 AVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ 80
>UniRef50_Q87PW8 Cluster: Transcriptional regulator, LysR family;
n=42; Gammaproteobacteria|Rep: Transcriptional
regulator, LysR family - Vibrio parahaemolyticus
Length = 326
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
++S+++ +LR D LF R G + PT FA+++ I L S+ G L +GS++
Sbjct: 53 SVSKTLSQLRETLKDDLFYRDGTRLVPTPFALNIGPSIHGILSSMNGLLH-QGSFN 107
>UniRef50_Q7VS13 Cluster: LysR-family transcriptional regulator;
n=3; Bordetella|Rep: LysR-family transcriptional
regulator - Bordetella pertussis
Length = 296
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAE--NQLSQFQTDLIIDNMFCTN 325
+ + +PS+G +++P + +PQ+ L ++ A +L + Q DL + + +
Sbjct: 95 LNLVASPSLGQMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGH 154
Query: 324 RTVQHHVLFTDNMVLICREGNPL 256
++ + MVLIC G+PL
Sbjct: 155 PNLEQEEIGAARMVLICPPGHPL 177
>UniRef50_Q5E1I8 Cluster: Transcriptional regulators, LysR family;
n=2; Vibrio|Rep: Transcriptional regulators, LysR family
- Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 279
Score = 35.1 bits (77), Expect = 1.6
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = -1
Query: 417 LLLRNPPIS-DAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNP--LPL* 247
LL +P + +++ + D++ID++ T+ T L ++ CR +P L
Sbjct: 104 LLTESPAVEYQMLDKIRSGEVDILIDDITVTDYTFVTESLGKMDIAFACRNDHPTILGYS 163
Query: 246 KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAII 67
E+ + HV+L + +N R E+F +R I + V N+D + I+
Sbjct: 164 LSLEQFNQAEHVMLKLKNENVGAFETRPDEIF-ERNIVREVSGPSNLLLSVRNTDAICIV 222
Query: 66 PQPFYNL 46
+ + L
Sbjct: 223 AESMFGL 229
>UniRef50_Q5W9E2 Cluster: Putative LysR-type transcriptional
regulator; n=2; Sphingobium|Rep: Putative LysR-type
transcriptional regulator - Sphingobium japonicum
Length = 329
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S+ +++LR F + LF+R +G+ PT+ A+ +SQ LE L E ++D
Sbjct: 33 LSRHLKQLREHFGNQLFVRTSRGLEPTSLAITAAPAVSQTLELYHSRLSGEPTFD 87
>UniRef50_A7HRT9 Cluster: Transcriptional regulator, LysR family;
n=1; Parvibaculum lavamentivorans DS-1|Rep:
Transcriptional regulator, LysR family - Parvibaculum
lavamentivorans DS-1
Length = 315
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S ++++LR D LF + G GV PT A L I L+++ L S+D
Sbjct: 36 AVSNALRRLRNFTGDTLFYKSGSGVAPTRAAATLAIPIGHALDTVERGLSSVRSFD 91
>UniRef50_A3XWH7 Cluster: Transcriptional regulator, LysR family
protein; n=4; Vibrionales|Rep: Transcriptional
regulator, LysR family protein - Vibrio sp. MED222
Length = 294
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
AIS+++ KL++ DPLFI+ G PT F E Q L SI
Sbjct: 35 AISKNLSKLKLQLDDPLFIQTKNGFEPTTFVETNIENFEQILSSI 79
>UniRef50_A1K8I6 Cluster: Transcriptional regulator, LysR family;
n=6; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Azoarcus sp. (strain BH72)
Length = 320
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFA 585
A+S + KLR I DPLF++ G+G+ TA A
Sbjct: 51 AVSHLLGKLRAIVGDPLFVKSGRGIVATARA 81
>UniRef50_A0HLX7 Cluster: Transcriptional regulator, LysR family;
n=1; Comamonas testosteroni KF-1|Rep: Transcriptional
regulator, LysR family - Comamonas testosteroni KF-1
Length = 319
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
+S ++ +LRV+ DPL +R G+G+ T A+ L + GL S+L A+
Sbjct: 37 MSNALNRLRVLTRDPLLVRVGKGMELTPRAVELAGLVKSGL-SVLDAI 83
>UniRef50_Q9KVS1 Cluster: Transcriptional regulator, LysR family;
n=36; Gammaproteobacteria|Rep: Transcriptional
regulator, LysR family - Vibrio cholerae
Length = 327
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S+S+ KLR F DPLF+R G+ T A+ L
Sbjct: 53 AVSKSLAKLREQFDDPLFVRTSYGLNATPKALFL 86
>UniRef50_Q7MNI1 Cluster: Transcriptional regulator; n=5;
Gammaproteobacteria|Rep: Transcriptional regulator -
Vibrio vulnificus (strain YJ016)
Length = 315
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
AISQ++QKLR F D LF++ G+ T F + I+ L+ + AL+
Sbjct: 39 AISQALQKLRHHFGDELFVKVPTGLEATPFTETVLTAITPHLDGLASALN 88
>UniRef50_Q63PA4 Cluster: LysR-family transcriptional regulator;
n=28; Burkholderiaceae|Rep: LysR-family transcriptional
regulator - Burkholderia pseudomallei (Pseudomonas
pseudomallei)
Length = 308
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
+S ++ +LR F DPLF+R +G+ PT A+ L L SI L +D
Sbjct: 36 VSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIERGLGAPHEFD 90
>UniRef50_Q4KHX1 Cluster: Transcriptional regulator, LysR family;
n=1; Pseudomonas fluorescens Pf-5|Rep: Transcriptional
regulator, LysR family - Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477)
Length = 308
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
AIS S+ KLR + DP+ IR+G + ++ A + I Q L ILG ++
Sbjct: 39 AISHSLSKLRGLLDDPILIRRGSELVLSSLAQN----IQQPLREILGQIE 84
>UniRef50_Q394G2 Cluster: Transcriptional regulator, LysR family;
n=11; Burkholderia cepacia complex|Rep: Transcriptional
regulator, LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 391
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
A S ++++LR + DPL +R G+ PT F L E + L I
Sbjct: 54 ATSAALKRLRTLLGDPLLVRSRYGMVPTEFGARLIEPLRNALRVI 98
Score = 34.7 bits (76), Expect = 2.1
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 6/173 (3%)
Frame = -1
Query: 504 RTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDA---ENQLSQFQTDLIIDNMF 334
RT I + L +P + + P L P+ D E L+ + D++IDN
Sbjct: 115 RTYRIGCPDYLNVLFVPKLVALFRDRAPSAQLVFHPLGDGFDDERALADGELDVVIDNRP 174
Query: 333 CTNRTVQHHVLFTDNMVLICREGNPLP-L*KMT-ERLSTTAHVLLLPEEQNFSG-LRQRV 163
+ + LF D +V + R +PL MT E + + P SG + +++
Sbjct: 175 ARSSRFRQDDLFDDRVVCLMRATHPLARRGTMTAEDFAEAPQLCPTPSWLEASGAIDKQL 234
Query: 162 QEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFPS 4
+ + R+I T + A + +DML +++ PL + P+
Sbjct: 235 ERVGLQRRIVVTLPHFELAAHALVRTDMLLTTTYRLARHYAKLLPLAAVALPA 287
>UniRef50_A6CZZ4 Cluster: Putative transcription regulator protein;
n=1; Vibrio shilonii AK1|Rep: Putative transcription
regulator protein - Vibrio shilonii AK1
Length = 306
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNE 501
++S+ I KLR DPLF+R + PT + ++ I Q L I L + SNE
Sbjct: 35 SVSKDISKLREQLDDPLFVRSNNRMLPTEYVKNIAPEIEQMLSDIRHTLTSRNTI-SNE 92
>UniRef50_A5V6I2 Cluster: Transcriptional regulator, LysR family;
n=1; Sphingomonas wittichii RW1|Rep: Transcriptional
regulator, LysR family - Sphingomonas wittichii RW1
Length = 301
Score = 34.7 bits (76), Expect = 2.1
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 5/172 (2%)
Frame = -1
Query: 507 QRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPIS-DAENQLSQFQTDLII--DNM 337
+R TI + V A++L R H P + R PIS ++ + DLII D++
Sbjct: 96 KREFTIVASDYVQAVLLEPFMRKAAHHAPGMRFRILPISQQGIDEFKRGVIDLIIVADSV 155
Query: 336 FCTNRTVQHHVLFTDNMVLICREGNPLPL*KMT-ERLSTTAHVLL-LPEEQNFSGLRQRV 163
Q LF D LIC +P +++ E+ T HV L + S +
Sbjct: 156 ILPEHPSQK--LFEDEAKLICSADHPTIGDEISMEQFGTVGHVTTSLHHHRPGSLFDLML 213
Query: 162 QEMFPDRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
E R+I +A V ++ +AI+ ++R P++ L P
Sbjct: 214 LERSIARRIEIQVPAFSMMAGAVVGTERVAILHARLATSYARILPIKLLSLP 265
>UniRef50_A5CSX6 Cluster: Putative transcriptional regulator, LysR
family; n=1; Clavibacter michiganensis subsp.
michiganensis NCPPB 382|Rep: Putative transcriptional
regulator, LysR family - Clavibacter michiganensis
subsp. michiganensis (strain NCPPB 382)
Length = 306
Score = 34.7 bits (76), Expect = 2.1
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
A+S+++ +LRV D + +R G+G+ PT FA+ +
Sbjct: 34 AVSRALGRLRVSMGDEILVRAGRGMVPTPFALRV 67
>UniRef50_A4X0G3 Cluster: Putative uncharacterized protein; n=1;
Rhodobacter sphaeroides ATCC 17025|Rep: Putative
uncharacterized protein - Rhodobacter sphaeroides ATCC
17025
Length = 506
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A S+ + +LR +F D L +R G+G+ PTA A L + +GL + AL
Sbjct: 63 AASRMLAQLRRLFDDELLVRSGRGMVPTALAGRLRMRV-RGLAAEADAL 110
>UniRef50_A4F7Y9 Cluster: Transcriptional regulator, LysR family;
n=2; Actinobacteria (class)|Rep: Transcriptional
regulator, LysR family - Saccharopolyspora erythraea
(strain NRRL 23338)
Length = 333
Score = 34.7 bits (76), Expect = 2.1
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 7/152 (4%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAE--NQLSQFQTDLIIDNMFCTN 325
+++ PS +VLP I R K YP++ LR + E +L + D + +
Sbjct: 93 LSLGFIPSASNVVLPPILRQFKARYPEVRLRLREMRPDEIVERLHDRRIDAGFFYLPIDD 152
Query: 324 RTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEM--- 154
++ + D++VL +PL + + +LP + GL V +
Sbjct: 153 PSLHVRSVADDSLVLALPSTHPLADSPEVDLRAVAGEPFILPPRYDMPGLYTSVTQACER 212
Query: 153 --FPDRQINFTSYNILTIAALVANSDMLAIIP 64
F R + + + TI LVA +A++P
Sbjct: 213 AGFTPRVVQPDVWLMQTIVGLVAGGMGIAVVP 244
>UniRef50_A1G103 Cluster: Transcriptional regulator, LysR family;
n=1; Stenotrophomonas maltophilia R551-3|Rep:
Transcriptional regulator, LysR family -
Stenotrophomonas maltophilia R551-3
Length = 322
Score = 34.7 bits (76), Expect = 2.1
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Frame = -1
Query: 498 ITIATTPSVGALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCTN 325
+ IA S +LP I + H+P +L L N +D + L + DL I +M
Sbjct: 109 LNIAANSSTILYLLPKIVERFRLHHPDVRLTLHNAISADGTDLLREDAADLAIGSMTDVP 168
Query: 324 RTVQHHVLFTDNMVLICREGNPLPL*KMTERLSTTAHVLLLPEEQNFSGLRQRVQEMFPD 145
+ + + VLI +PL E + L+LP ++ + + V ++F
Sbjct: 169 ADLSYAPAYRFEQVLIAPHDHPLASGGELELADIARYPLVLPPKRQIT--YRLVDQVFQR 226
Query: 144 RQINFT 127
+I +T
Sbjct: 227 HRIAYT 232
>UniRef50_A1FFV7 Cluster: Transcriptional regulator, LysR family;
n=5; Pseudomonas|Rep: Transcriptional regulator, LysR
family - Pseudomonas putida W619
Length = 314
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S+ + LR F DPL +R+G+G + + L E + Q LE L AL ++D
Sbjct: 38 ALSRQLAHLREAFDDPLLVRQGRGYVLSEYGQALVEPLRQVLEE-LQALRQPAAFD 92
>UniRef50_A0VSK5 Cluster: Transcriptional regulator, LysR family;
n=1; Dinoroseobacter shibae DFL 12|Rep: Transcriptional
regulator, LysR family - Dinoroseobacter shibae DFL 12
Length = 317
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 671 SQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
S +++LR DPLF++ G+G+ PT A L + L + G L +YD
Sbjct: 60 SHGLERLRKALGDPLFVKSGRGIAPTDTAKELAPRVRAVLIGLEG-LRTSATYD 112
>UniRef50_A0NXF9 Cluster: Probable transcription regulator protein;
n=2; Rhodobacteraceae|Rep: Probable transcription
regulator protein - Stappia aggregata IAM 12614
Length = 312
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPT 594
A+S +I KLR +F DPLF+R+ + + PT
Sbjct: 38 AVSYTINKLRDVFQDPLFVRQARRLHPT 65
>UniRef50_A0KKG7 Cluster: HTH-type transcriptional regulator YidZ;
n=3; Aeromonas|Rep: HTH-type transcriptional regulator
YidZ - Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240)
Length = 324
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQ 558
+S+++ +LR F DPLF+R +G+ PT ++ L E + +
Sbjct: 38 VSKALARLRDWFDDPLFLRTQRGLEPTNLSLTLEEELKE 76
>UniRef50_A0J9T4 Cluster: Transcriptional regulator, LysR family;
n=2; Shewanella|Rep: Transcriptional regulator, LysR
family - Shewanella woodyi ATCC 51908
Length = 317
Score = 34.7 bits (76), Expect = 2.1
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
A+SQ +++LR++F DPL ++ G+T T+ A + + L ++ L+
Sbjct: 43 AMSQVLKRLRLMFEDPLLVKSHNGMTLTSKATAIESELKPLLNRVISILE 92
>UniRef50_A0J3K4 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella woodyi ATCC 51908|Rep: Transcriptional
regulator, LysR family - Shewanella woodyi ATCC 51908
Length = 305
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHL 576
+S + +LR I +PLF+R G+G+ PT A L
Sbjct: 40 VSNGLDRLRRIIGEPLFVRSGRGIIPTQEASRL 72
>UniRef50_Q62E17 Cluster: Transcriptional regulator, LysR family;
n=24; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia mallei (Pseudomonas mallei)
Length = 308
Score = 34.3 bits (75), Expect = 2.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPT 594
A++ ++ +LR F DPLF+R+G V PT
Sbjct: 37 AVTHALNRLRAHFGDPLFVRQGNKVVPT 64
Score = 33.5 bits (73), Expect = 4.8
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 5/159 (3%)
Frame = -1
Query: 468 ALVLPVIYRAIKTHYP--QLLLRNPPISDAENQLSQFQTDLIIDNMFCTN-RTVQHHVLF 298
++ LP + + P +L+ R P++D +L DL I+ R V HV
Sbjct: 110 SIALPQLVETLAREAPGVRLVSRRVPVADIGRELGSGNLDLAIERRVPAGPRIVAEHVA- 168
Query: 297 TDNMVLICREGNPLPL*KMTER-LSTTAHVLLLP-EEQNFSGLRQRVQEMFPDRQINFTS 124
D +V+ R + L + HV + P E + + F R+I
Sbjct: 169 DDTLVVAMRRDHALAGAPLRRADYFAAGHVTVSPLGEPHTLDVLLGADGRF--RRIQLVC 226
Query: 123 YNILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
+ +VA+ D+L +P+ + +R PL P P
Sbjct: 227 QHYFAACQIVASGDLLLTLPRSYALRMTRLLPLAAQPLP 265
>UniRef50_Q5LR91 Cluster: Transcriptional regulator, LysR family;
n=3; Rhodobacteraceae|Rep: Transcriptional regulator,
LysR family - Silicibacter pomeroyi
Length = 310
Score = 34.3 bits (75), Expect = 2.8
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -1
Query: 501 TITIATTPSVGALVLPVIYRAIKTHYPQLLL--RNPPISDAENQLSQFQTDLIIDNMFCT 328
T+ + +TP++G +LP + R + YP+L L R+ D L+ + DLI+ ++ +
Sbjct: 96 TLRLGSTPTIGPYLLPRVLRQLHRQYPRLKLAIRDGAPRDLVEDLAAGRYDLILTHLPVS 155
Query: 327 NRTVQHHVLFTDNMVL 280
++ LF + + L
Sbjct: 156 RDDIRVAPLFREPLEL 171
>UniRef50_Q477L7 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=3; Burkholderiales|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Ralstonia
eutropha (strain JMP134) (Alcaligenes eutrophus)
Length = 315
Score = 34.3 bits (75), Expect = 2.8
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALD 528
AIS ++++LR IF DPL R+ + PT A+ L ++ ++ L ALD
Sbjct: 38 AISSALKRLRAIFNDPLLTREKNVMVPTERALQL----ARNAQAALSALD 83
>UniRef50_Q39J39 Cluster: Transcriptional regulator, LysR family;
n=49; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 315
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
AIS +++KLR DP+ +R G+ PT + L E + L + G +D
Sbjct: 40 AISTALRKLRETLNDPILVRGKSGMVPTEYGASLLEAAQRALREVDFIATPHGDFD 95
>UniRef50_Q9FD34 Cluster: PnbR; n=2; Pseudomonas|Rep: PnbR -
Pseudomonas putida
Length = 348
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGAL 531
A+S ++ +LR +F+R G+G++PT++A+ + + L S+ AL
Sbjct: 56 AVSHALSRLREGLGQEIFVRTGKGMSPTSYALEISGALHAALLSMSKAL 104
>UniRef50_Q0B1J5 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia ambifaria AMMD|Rep: Transcriptional
regulator, LysR family - Burkholderia cepacia (strain
ATCC 53795 / AMMD)
Length = 321
Score = 34.3 bits (75), Expect = 2.8
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
A+S +Q+ R+ LF+R GVTPT AM L + + LE + AL +D
Sbjct: 56 AVSLMVQRWRLALGTTLFVRTRYGVTPTDAAMALRDKLHPLLEGMSLALANSRGFD 111
>UniRef50_Q085G5 Cluster: Transcriptional regulator, LysR family
protein; n=1; Shewanella frigidimarina NCIMB 400|Rep:
Transcriptional regulator, LysR family protein -
Shewanella frigidimarina (strain NCIMB 400)
Length = 318
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESI 543
++S +I +L+ LFIR G+G+ PTA H+ + L++I
Sbjct: 50 SVSNAINRLKHALECELFIRIGRGIEPTAIGTHIFNTVQPMLDTI 94
>UniRef50_A6VSJ2 Cluster: Transcriptional regulator, LysR family;
n=19; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Marinomonas sp. MWYL1
Length = 328
Score = 34.3 bits (75), Expect = 2.8
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDSNER 498
AIS ++ LR IF DPL +R+ + T+ A L +++ L LGAL + +++S +
Sbjct: 56 AISHALANLRAIFNDPLLVRRTGKLELTSRANELLPTLTEALHQ-LGALIEQPTFESTQA 114
Query: 497 *LLRPLPRSEHWS 459
+ L S++ S
Sbjct: 115 KRVFRLAMSDYGS 127
>UniRef50_A4GJC2 Cluster: Transcriptional regulator LysR family
protein; n=1; uncultured marine bacterium EB0_49D07|Rep:
Transcriptional regulator LysR family protein -
uncultured marine bacterium EB0_49D07
Length = 303
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 677 AISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE 549
A+S ++ +LR F D LF+R G G+ PT ++ + I L+
Sbjct: 36 AVSNALSRLREKFDDELFVRTGSGMVPTQKTENIIQDIQNALQ 78
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,925,224
Number of Sequences: 1657284
Number of extensions: 14077004
Number of successful extensions: 35567
Number of sequences better than 10.0: 294
Number of HSP's better than 10.0 without gapping: 34385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35532
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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