Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    28   1.4  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   1.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   2.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.6  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 216 HVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVA 91
           H+  + E++NF+    R+   + DR I +T+Y  LT++ L+A
Sbjct: 7   HIENVKEKKNFA---VRLYRHWVDRTIPYTTYRWLTVSGLIA 45


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -1

Query: 348 IDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*---KMTERLSTTAHVLLLPEEQNFSG 178
           +D   C N +V+ +       V +   G  + +    KM    + T H L+   E+ F+ 
Sbjct: 465 VDESLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNA 524

Query: 177 LRQRVQEMFPDRQINFTSYNIL 112
           L+  + E+ PD  +   + N L
Sbjct: 525 LKGGLNELIPDSVLQIFNENEL 546


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = -1

Query: 384 ENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREG---NPLPL*KMTERLSTTAH 214
           E+ +   Q ++     FC  R++  H + +D    +   G    P PL + T+  +T  +
Sbjct: 122 ESDIQNAQVEM--QGAFCLKRSILVHSVKSDKNTYLSSPGFYGTPQPLNQFTDPNNTAVY 179

Query: 213 VLLLPEEQNFSGLR 172
           V  LPE      LR
Sbjct: 180 VHQLPENITTQELR 193


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 128 VKLICRSGNIS*TLCRRPLKFCSSGNRSTCAVVDSLSVIF*RGSGFPSRQINTILSV 298
           VK +  S  I  T+C   L + SSG + + +V+  LS    +GS +  R  + ++ +
Sbjct: 559 VKCLNCSNKIIHTVCHNSLIYFSSGLKMSKSVISCLSRKLVKGSEYLLRTYHEVIRI 615


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NFALPVTEVHAQLSIVSLSSSKEVVDFPRGKLTP 287
           N ALP+   HA +S +  S S  V  +   + TP
Sbjct: 291 NNALPMDNTHANISYMQSSQSMPVNSYSYDRYTP 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,759
Number of Sequences: 5004
Number of extensions: 58143
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)