Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     30   1.5  
02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624...    30   2.0  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     29   3.4  
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    29   4.5  
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568...    28   7.9  

>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -3

Query: 319  GATSCSVHRQYGVNLPRGKSTTSLEDD----RETID-NCACTSVTGRAKFQRSAAESSRN 155
            GA      RQY +NLP G ST   + +    R+ +D N    SV    K +R +    +N
Sbjct: 1432 GALPAQHTRQYAINLPEGSSTVGHDSNRKWGRQGLDLNSGPGSVDAEIKDERVSLPVRQN 1491

Query: 154  VSGPANQF 131
            +  P + F
Sbjct: 1492 LITPPHAF 1499


>02_04_0655 +
           24761323-24761424,24761565-24761675,24762361-24762472,
           24763049-24763113,24763727-24763804,24764550-24764624,
           24764747-24764899,24764988-24765122,24765325-24765495
          Length = 333

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 334 LHQSYGATSCSVHRQYGVNLPRGKSTTSLEDDRETIDN 221
           +H+  GA    +  +YG+N+PRG +  S+E+ + T+ N
Sbjct: 30  IHEYQGA---ELMGKYGINVPRGAAAGSVEEVKNTLKN 64


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 319  GATSCSVHRQYGVNLPRGKSTTSLEDDRE 233
            GA      RQY +NLP G ST   +++R+
Sbjct: 1509 GALPAQHTRQYAINLPEGSSTVGHDNNRK 1537


>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -3

Query: 430 SLSAAFTAQPAHQRRGKPTQSVSNRSHNR*HVLHQSYGATSCSVHRQYGVNLPRGKSTTS 251
           S+S + + +P    +GK  ++V   S+ + H       A   S HR Y    P G    S
Sbjct: 457 SVSTSSSKKPPTNTKGKSGRTVETNSYEKAHF------ALCASEHRAYRTMTPHGSDDRS 510

Query: 250 LEDDR 236
            +D R
Sbjct: 511 SDDGR 515


>03_02_0110 -
           5678057-5678794,5679279-5679470,5679971-5680087,
           5680331-5680402,5680444-5680569,5681086-5681445,
           5681944-5682057,5682158-5682199
          Length = 586

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 235 ETIDNCACTSVTGRAKFQRSAAESSRN-VSGPANQFHQLQHFDNRCTGC 92
           ET  N A      R+ FQ SAA S+RN  S P + F        R + C
Sbjct: 465 ETSGNLAPLQFEARSAFQPSAAASTRNAASSPESSFDSPDLHPFRLSSC 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,171
Number of Sequences: 37544
Number of extensions: 399353
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)