Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51676| Best HMM Match : LysR_substrate (HMM E-Value=4.2e-29)        41   0.001
SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13)                 28   6.0  
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)                    28   6.0  

>SB_51676| Best HMM Match : LysR_substrate (HMM E-Value=4.2e-29)
          Length = 313

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
 Frame = -1

Query: 468 ALVLPVIYRAIKTHYPQ--LLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFT 295
           A +LP++   +    PQ  LL++         +L     DL ID +   +  + +  L  
Sbjct: 123 AALLPMLQAHLARSAPQVELLVQADDADSLVKRLESGALDLAIDYLHFDSPDLHYAPLRE 182

Query: 294 DNMVLICREGNPLPL*KMT-ERLSTTAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYN 118
           + +V I R G+P     ++ E      H+ + P     S L   +      RQ      N
Sbjct: 183 EPLVAIGRAGHPAFTGGLSLEDYQQARHITVTPRAGRGSPLEIVLGSARVRRQAPLHLPN 242

Query: 117 ILTIAALVANSDMLAIIPQPFYNLFSRCWPLEKLPFP 7
            L I A+VA +D+L  +P      F+    LE  P P
Sbjct: 243 YLPIPAIVAQTDLLGTVPARLAEAFAPVHALEIAPLP 279



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 674 ISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYD 510
           +S ++ +LR    + LF R  +G+TPTA A  L+  + Q L  +   L     +D
Sbjct: 52  VSNALARLRQQLGEELFQRTARGMTPTARAQALYIPVRQALRLLQTGLGPAEPFD 106


>SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -3

Query: 337 VLHQSYGATSCSVH-RQYGVN---LPRGKSTTSLEDDRETIDNCA 215
           +LH  YGA   S+  +Q G N    P+ ++ T  EDDR+ +D CA
Sbjct: 200 ILH--YGADIVSLQLKQDGYNGIFSPKSRARTMSEDDRKHVDGCA 242


>SB_32116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -3

Query: 337 VLHQSYGATSCSVH-RQYGVN---LPRGKSTTSLEDDRETIDNCA 215
           +LH  YGA   S+  +Q G N    P+ ++ T  EDDR+ +D CA
Sbjct: 42  ILH--YGADIVSLQLKQDGYNGIFSPKSRARTMSEDDRKHVDGCA 84


>SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = -3

Query: 601 LLPHLRCIYMSISVRALSPFLARWISKEAMIATNDNYCDHSLGRSTGP---SCHLSGD*N 431
           +LPH R +    S   L   ++   SKE +    D +C  S+ +ST       HLSG   
Sbjct: 19  VLPHGRRVLNKSSSEILGQNVSEKASKEDLHHEWDEHCLASISKSTAEWIVKEHLSGPEK 78

Query: 430 SLSAAFTAQ---PAHQRRGKPTQSVSNR 356
              A F  +   P+ +   KP +S + R
Sbjct: 79  ERLAVFLKERYKPSQETDSKPEKSETRR 106


>SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13)
          Length = 263

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 453 VIYRAIKTHYPQL-LLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVL 301
           +I  ++  + P++ LL+NP  ++ E QL + QT +  +  F      Q+H++
Sbjct: 196 IILNSMHKYQPRVHLLKNPADTNYEGQLEEAQTFVFPETAFMAVTAYQNHLV 247


>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 652 CALYSLTHCLFAKARV*LLPHLRCIYMSISVRA 554
           CA+  L+HC  AKA +  LP  RC  +  S +A
Sbjct: 802 CAVGELSHCPCAKAGLKCLPFCRCSKLLCSNKA 834


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,982,851
Number of Sequences: 59808
Number of extensions: 468701
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)