Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022419-1|AAY54835.1|  200|Drosophila melanogaster IP08048p pro...    29   5.8  
AE014297-603|AAF54027.2|  200|Drosophila melanogaster CG17944-PB...    29   5.8  
AE014297-602|AAN13352.1|  166|Drosophila melanogaster CG17944-PA...    29   5.8  
BT022716-1|AAY55132.1|  536|Drosophila melanogaster RE69201p pro...    29   7.7  
AE014134-951|AAF52276.2|  606|Drosophila melanogaster CG31646-PA...    29   7.7  

>BT022419-1|AAY54835.1|  200|Drosophila melanogaster IP08048p
           protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 211 TSVTGRAKFQRSAAESS--RNVSGPANQFHQLQHFD 110
           TS + R KF R  A S+  R+  GPA++F  L H D
Sbjct: 55  TSTSRRLKFLRKMAFSNKIRSFGGPASRFGSLSHSD 90


>AE014297-603|AAF54027.2|  200|Drosophila melanogaster CG17944-PB,
           isoform B protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 211 TSVTGRAKFQRSAAESS--RNVSGPANQFHQLQHFD 110
           TS + R KF R  A S+  R+  GPA++F  L H D
Sbjct: 55  TSTSRRLKFLRKMAFSNKIRSFGGPASRFGSLSHSD 90


>AE014297-602|AAN13352.1|  166|Drosophila melanogaster CG17944-PA,
           isoform A protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 211 TSVTGRAKFQRSAAESS--RNVSGPANQFHQLQHFD 110
           TS + R KF R  A S+  R+  GPA++F  L H D
Sbjct: 55  TSTSRRLKFLRKMAFSNKIRSFGGPASRFGSLSHSD 90


>BT022716-1|AAY55132.1|  536|Drosophila melanogaster RE69201p
           protein.
          Length = 536

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -3

Query: 292 QYGVNLPRGKSTTSLEDDRET-IDNC--ACTSVTGRAKFQRSAAESSRNVSGPANQFHQL 122
           Q    L RGKS +   D   + ++N     TS    ++   S++ SS + S      HQ 
Sbjct: 393 QQNTKLQRGKSNSKGSDQSPSGLNNVFVGATSSLWNSQDHHSSSSSSSSASSRGRDHHQQ 452

Query: 121 QHFDNRCTGCQQ*HVSDY 68
           QH   +    QQ H SD+
Sbjct: 453 QHHQQQ----QQNHGSDH 466


>AE014134-951|AAF52276.2|  606|Drosophila melanogaster CG31646-PA
           protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -3

Query: 292 QYGVNLPRGKSTTSLEDDRET-IDNC--ACTSVTGRAKFQRSAAESSRNVSGPANQFHQL 122
           Q    L RGKS +   D   + ++N     TS    ++   S++ SS + S      HQ 
Sbjct: 472 QQNTKLQRGKSNSKGSDQSPSGLNNVFVGATSSLWNSQDHHSSSSSSSSASSRGRDHHQQ 531

Query: 121 QHFDNRCTGCQQ*HVSDY 68
           QH   +    QQ H SD+
Sbjct: 532 QHHQQQ----QQNHGSDH 545


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,504,505
Number of Sequences: 53049
Number of extensions: 669315
Number of successful extensions: 1651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)