Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78416-4|CAB01678.2|  611|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL132862-24|CAB60560.1|  173|Caenorhabditis elegans Hypothetical...    28   5.3  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    28   5.3  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    28   5.3  
Z81562-2|CAB04559.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z78416-4|CAB01678.2|  611|Caenorhabditis elegans Hypothetical
           protein C23H4.4 protein.
          Length = 611

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 414 LLRNPPISDAENQLSQFQTDLIIDNMFC 331
           ++R PP+ D + +LS+F+ ++   NM C
Sbjct: 317 IIRAPPLMDVKQKLSEFKENVTARNMLC 344


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 90   NSDMLAIIPQPFYNLFSRCWPL 25
            N D+L ++    +N FS+CWP+
Sbjct: 1001 NRDVLTVLTDHHFNQFSQCWPM 1022


>Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 340 HVLHQSYGATSCSVHRQYGVNLPRGKSTTSLEDDRETIDN 221
           H  H + GA    + R + VNLPRG+    L DD E  +N
Sbjct: 505 HPNHNAPGAMRTPLQRCHPVNLPRGR--LDLNDDDEEDEN 542


>Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 340 HVLHQSYGATSCSVHRQYGVNLPRGKSTTSLEDDRETIDN 221
           H  H + GA    + R + VNLPRG+    L DD E  +N
Sbjct: 505 HPNHNAPGAMRTPLQRCHPVNLPRGR--LDLNDDDEEDEN 542


>AL132862-24|CAB60560.1|  173|Caenorhabditis elegans Hypothetical
           protein Y73F8A.31 protein.
          Length = 173

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 4   GRKRQFFQRPAAAKQVIKRLGNNR*HVTVGNQCSD 108
           GR+R    R     Q+  R+GN R H  + N+ S+
Sbjct: 8   GRQRSICSRSTHPSQLASRIGNGRIHCLITNEISN 42


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 324 RTVQHHVLFTDNMVLICREGNPLPL 250
           R + + V+ T+NM+L CR GN + L
Sbjct: 529 RKISYQVVLTENMMLKCRVGNRVAL 553


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 324 RTVQHHVLFTDNMVLICREGNPLPL 250
           R + + V+ T+NM+L CR GN + L
Sbjct: 529 RKISYQVVLTENMMLKCRVGNRVAL 553


>Z81562-2|CAB04559.1|  331|Caenorhabditis elegans Hypothetical
           protein K03D7.4 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 147 DRQINFTSYNILTIAALVANSDMLAIIPQPFYNLFSR 37
           D  I F +Y+I TI   V  SDML I    +Y LF +
Sbjct: 84  DVPIGFQAYSIWTILFTVLVSDML-IFENRYYQLFGK 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,285
Number of Sequences: 27780
Number of extensions: 339228
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)