Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 419 SFYCATRPSATRKTNSVSFKPIS 351
           S YC  RPS    +N    +PIS
Sbjct: 44  SGYCGRRPSTFGSSNEALPQPIS 66


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 419 SFYCATRPSATRKTNSVSFKPIS 351
           S YC  RPS    +N    +PIS
Sbjct: 44  SGYCGRRPSTFGSSNEALPQPIS 66


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 348 IDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*K 244
           +D   C+ R   +    TD++V + +EG+P+ + K
Sbjct: 169 LDRQVCSLRMASYGWT-TDDLVFLWKEGDPVQVVK 202


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 348 IDNMFCTNRTVQHHVLFTDNMVLICREGNPLPL*K 244
           +D   C+ R   +    TD++V + +EG+P+ + K
Sbjct: 169 LDRQVCSLRMASYGWT-TDDLVFLWKEGDPVQVVK 202


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 653 LRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESIL 540
           L+ +  DP+F +K           H +  ++ G+E IL
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMIL 243


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 653 LRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESIL 540
           L+ +  DP+F +K           H +  ++ G+E IL
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMIL 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,413
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)