Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0222.Seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44440.1 68415.m05526 emsy N terminus domain-containing prote...    30   1.6  
At2g15590.1 68415.m01785 expressed protein                             29   2.1  
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv...    29   2.8  
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-...    29   3.7  
At4g14400.3 68417.m02222 ankyrin repeat family protein contains ...    28   4.9  
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ...    28   4.9  
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ...    28   4.9  
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    28   6.5  
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    27   8.6  
At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI...    27   8.6  

>At2g44440.1 68415.m05526 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 429

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 568 ISVRALSPFLARWISKEAMIATNDNYCDHSLGRSTGPSC 452
           + +  +SP    WI ++  +    N   H L R+TGP+C
Sbjct: 298 VRLSEISPGDIEWIGEDPGLGNRYNGQGHGLNRTTGPNC 336


>At2g15590.1 68415.m01785 expressed protein 
          Length = 125

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 307 CSVHRQYGVNLPRGKSTTSLEDDRETIDNCACTSVTGRAKFQR 179
           C+VHRQY  +L R   T+S   D E  ++   T++  +A  +R
Sbjct: 86  CAVHRQYSNHLSR---TSSFASDHEVSNSNNITTIVDKATLKR 125


>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 633

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 334 LHQSYGATSCSVHRQYGVNLPRGKSTTSLEDDRETIDNCACT-SVTGRAKFQRSAAES 164
           L+Q++        +Q   N P   S+   E+D E +++C C  + +GR K  R+AA+S
Sbjct: 573 LYQTWTIAGFLTSKQLLQN-PEIASSLFWEEDLELLESCVCVLTKSGRKKCSRAAAKS 629


>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
           beta-chain, mitochondrial, putative / succinyl-CoA
           synthetase, beta chain, putative / SCS-beta, putative
           identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
           beta-chain, mitochondrial precursor (EC 6.2.1.4)
           (Succinyl-CoA synthetase, beta chain) (SCS- beta)
           {Arabidopsis thaliana}; similar to SP|O97580
           Succinyl-CoA ligase [ADP-forming] beta-chain,
           mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
           contains Pfam profiles PF00549: CoA-ligase, PF02222:
           ATP-grasp domain
          Length = 421

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = -3

Query: 334 LHQSYGATSCSVHRQYGVNLPRGKSTTSLEDDRETIDN 221
           +H+  GA    +  +YGVN+P+G + +SLE+ ++ I +
Sbjct: 29  IHEYQGA---ELMGKYGVNVPKGVAASSLEEVKKAIQD 63


>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 13  RQFFQRPAAAKQVIKRLGNNR*HVTVGNQCS 105
           ++F +R  A+K ++ RLG N  HV   N+ S
Sbjct: 281 KEFIKRCPASKYLLNRLGQNILHVAAKNEAS 311


>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 13  RQFFQRPAAAKQVIKRLGNNR*HVTVGNQCS 105
           ++F +R  A+K ++ RLG N  HV   N+ S
Sbjct: 281 KEFIKRCPASKYLLNRLGQNILHVAAKNEAS 311


>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 670

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 13  RQFFQRPAAAKQVIKRLGNNR*HVTVGNQCS 105
           ++F +R  A+K ++ RLG N  HV   N+ S
Sbjct: 347 KEFIKRCPASKYLLNRLGQNILHVAAKNEAS 377


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
            P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
            subsp. vulgare]
          Length = 1240

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 268  GKSTTSLEDDRETIDNCACTSVTGRAKFQRSAAESSRNVSGPANQFHQL 122
            G+++  +     TI NC    V G+ K   S   SS    GP   +  L
Sbjct: 1184 GRTSIMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSL 1232


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 526 SKEAMIATNDNYCDHSLGRSTGPSCHLSGD*NSLSAAFTAQPAHQ--RRGKPTQSVSNRS 353
           S+    + +D+    S  RS GPSC  S    S+S A +  P  +   R +   S  +RS
Sbjct: 187 SRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRS 246

Query: 352 HNR 344
            +R
Sbjct: 247 QSR 249


>At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA)
           nearly identical to C-terminal binding protein
           ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535;
           contains Pfam profile PF02826: D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain
          Length = 636

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -2

Query: 197 KSKISAVCGREFKKCFRT--GKSISPATTF*QSLHWLPTVTC*RLFPSRFITCLAAAGR 27
           +  ++ V G E+    R   GK  S       SL +LP     RL P + I CL +A R
Sbjct: 36  QDSLAGVAGVEYVPLSRIADGKIESATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADR 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,029
Number of Sequences: 28952
Number of extensions: 310083
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)