Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0221.Seq
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.0  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    23   2.7  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   3.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.2  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
          protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 92 PNYHNMYHHRQ 60
          P YH  +HH+Q
Sbjct: 12 PKYHQQFHHQQ 22


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
          protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 92 PNYHNMYHHRQ 60
          P YH  +HH+Q
Sbjct: 12 PKYHQQFHHQQ 22


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 80  CGSWDDGKAHGHGVCTGP 133
           CG    G+  G  +C GP
Sbjct: 48  CGPGQSGQCFGPSICCGP 65


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 239 FHSAIVLRKCSHWARCRRPILQNR 168
           FHS ++L   S + R +  + QNR
Sbjct: 149 FHSTLLLMILSRYQRLKAQLWQNR 172


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 263 TATGGFIAVNGHKVPKADTAYDRAQLA 343
           T+T   + VN   + +  TA+ R QLA
Sbjct: 58  TSTTSSVNVNDQNIRRYRTAFTREQLA 84


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = -2

Query: 144 PWALGPVHTPWPWALPSSQLPQYVPPSSKS-NRPPLRARCGGFPLAA 7
           PW   P   P P + PSS   Q    S+ + +   +   C   P  A
Sbjct: 66  PWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTA 112


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 479 LSDWRRITGPVAPSPRLDVFAHGSWQRLGSFGKAEPTVWTTP 604
           + D+  + GP   +P +++     +  + S+   EPT+ TTP
Sbjct: 373 MDDFHGLCGP--KNPLINIL----YANMNSYSVPEPTISTTP 408


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
          neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 99 PSSQLPQYVPPSSKSNRPPL 40
          P     +Y+PPS    RP L
Sbjct: 17 PKDMNARYLPPSLSDTRPML 36


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 110 HGPCRHPNYHNMYHH 66
           H P   P +HN Y H
Sbjct: 432 HRPPGDPAFHNQYAH 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,645
Number of Sequences: 336
Number of extensions: 3958
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)