Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0221.Seq
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 30 0.23
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.40
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 1.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 2.2
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 27 2.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 2.8
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 26 3.8
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 3.8
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 26 3.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.8
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 5.0
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.0
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 25 6.6
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 25 6.6
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 30.3 bits (65), Expect = 0.23
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 263 TATGGFIAVNGHKVPKADTAYDRAQLATPSMKAHGLTDFKTATALKHTPMVAHIKDNGC 439
+AT FI D + Q+ + S++ GL F+ + + KH +V + DNGC
Sbjct: 163 SATSNFIFPVQQWTRPPDALVEGMQVVSKSLQTEGL--FRKSCSRKHLDIVIELYDNGC 219
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.5 bits (63), Expect = 0.40
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 189 TPDTSKPKFQEPA*APWALGPVHTPWPWALPSSQLPQYVPPS 64
T D SKP + P WA TP W P+YVPPS
Sbjct: 952 TEDNSKP-YTAPTPGAWA---APTPGGWDDEEGDSPKYVPPS 989
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = -2
Query: 453 MTTPSHP-LSLICATIGVCFRA-VAVLKSVSPCAFILGVANCALSYAVSAFGTLCPFTAI 280
+T P P + L C + +CF++ + C L + CA + C +
Sbjct: 1833 LTEPMEPAICLFCGKL-LCFQSHCCSFNGIGECN--LHMQQCASDIGIFLIVKKCAILYL 1889
Query: 279 NPPVAVFDTNP 247
NPPV F P
Sbjct: 1890 NPPVGSFSVAP 1900
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 TLLAETP-RSAPSTVADSTLTMVVHIVVVGMTARPMATECALGLKPKEPTPVLGTSVLKY 182
T+ + TP S P T + T + V +T+ + + + TP+ GTS K
Sbjct: 574 TISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKV 633
Query: 183 RASTPGPVGALTKDNGRVENGT 248
+ST P+ + + + + T
Sbjct: 634 TSSTSIPLTSTNRTSTTFTSST 655
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 259 ENRDRWIYRGEWTQGSKGRYGVRQSTISNAKYEG 360
+ R W +RGE+ KG Y + S + + ++ G
Sbjct: 664 DRRMVWAWRGEYYPAKKGEYHMIYSALQSERFPG 697
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 417 ATIGVCFRAVAVLKSVSPCAFILGVANCALSYAVSAFGTLC 295
+TIG C VA L + +PCA G + S A+ A LC
Sbjct: 299 STIGFCSGVVAGLVAATPCA---GFVSPHASLAIGAITGLC 336
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 377 FKTATALKHTPMVAHIKDNGCEGVVMDTASVHQHLSDWR 493
FK +++ P++ D+G G V+D+ ++H + D+R
Sbjct: 2018 FKRLLSIQRYPVIPLSPDSGLLGWVLDSDTLHVLIRDYR 2056
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 511 DRPGNATPVRKVLMYGRRIHDDTLASIVLDMC 416
+R GN +++ +MY R DD+ S LD C
Sbjct: 165 ERYGNTRRMQQAMMYYRSNEDDSQYSHPLDFC 196
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 379 QDGYGSETYADGGTYQGQWMRGCRHGYGV 465
+D S TY++GG + + HG GV
Sbjct: 412 EDAPSSSTYSEGGAFYAMGLIHANHGRGV 440
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 117 PWPWALPSSQLPQYVPPSSKSNRPPLRARCGGFP 16
PW ++ +Y K PLR C GFP
Sbjct: 217 PWQGLKAATNKQKYERIGEKKQSTPLRELCAGFP 250
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 3 RTLLAETPRSAPSTVADSTLTMVVHIVVVGMTARPMATECALGLKPKEPTPVL 161
RT + ST DS+ + VV G + ++ A +KP++P P L
Sbjct: 865 RTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPAL 917
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 441 SHPLSLICATIGVCFRAVAVLKSVSPCAFILGVANCALSYAV 316
S+ SLI ++ + VA++ + C ILG+ + AL Y +
Sbjct: 536 SYKRSLIYSSFWILNPFVAIISTRGNCEAILGILSIALLYLI 577
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 5.0
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Frame = +2
Query: 209 STYEGQWQSGKRHGLVSKTA--TGGFIAVNGHKVPKADTAYDRAQLATPSMKAHGLTDFK 382
S Y S RH + + A TG NG+ + DT+ + + PS +A D K
Sbjct: 198 SLYAAAAASAARHSMSAAYASFTGTVYDSNGNVIKGLDTSSSLSSSSHPSHEALSTIDTK 257
Query: 383 TATALKHTPMVAHIKDNGCEGVVMDTAS-VHQHLSD 487
AL + + + + D S + +H D
Sbjct: 258 NLQALAASAAPSSCRQQPVDEERQDRVSKISKHFQD 293
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 256 VENRDRWIYRGEWTQGSKGRYGVRQSTISNAKY 354
V +R ++RGEW + S G + +R T+ Y
Sbjct: 171 VGDRSLELHRGEWNKVSSGCWEIRGKTLGIIGY 203
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 180 YRASTPGPVGALTKDNGRVENGTDWCRKPRPVDLS 284
Y STP P L + NG + G + RP +S
Sbjct: 24 YIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSIS 58
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 389 TALKHTPMVAHIK-DNG-CEGVVMDTASVH---QHLSDWRRITGPVAPSPRLDVFAH 544
TALK P++ ++K DN C +++ ++ + L+DWR +T PV + + H
Sbjct: 530 TALK-LPVIKYVKGDNRFCFKQLLEYYDIYLKFKLLADWRLLTNPVLQIQEISDYCH 585
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 117 PWPWALPSSQLPQYVPPSSKSNRPPL 40
P P ++PSS+ P+ VP S PP+
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPI 256
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 250 SVPFSTLPLSFVSAPTGP 197
S P S LP+S VSAP+ P
Sbjct: 233 SPPSSALPVSLVSAPSPP 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,504
Number of Sequences: 5004
Number of extensions: 65512
Number of successful extensions: 215
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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