Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0221.Seq
         (616 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    27   0.36 
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    27   0.64 
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   1.5  

>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
 Frame = +3

Query: 15  AETPRSAPSTVADSTLTMVVHIV---------VVGMTARP--MATECALGLKP------- 140
           ++TPRS PS + + + +  V +V         V  +T     MA E ++  +P       
Sbjct: 27  SKTPRSPPSDLGECSASPTVEVVASTSVDSAVVEAVTGEENVMAAEDSVTSQPVESFSSS 86

Query: 141 KEPTPVLGTSVLKYRASTPGPVGALTKDNGRVEN 242
           KEP  V+G S L+      G + A TKD   V +
Sbjct: 87  KEPALVVGGSKLQEALKVAGELHAYTKDRNNVHH 120


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
 Frame = +2

Query: 41   NGGRFDFDDGGTYCGSWDDGKAHGHGVCT-------GPKAQGAYAGSW-NFGFEVSGVYT 196
            NG   D D G    GS D+G  HG G  +       G K++G    +  N G   S +  
Sbjct: 2033 NGNEND-DSGDGATGSGDNGSQHGGGSISGGGGTPGGGKSKGIIGSTQANIGIVDSNISP 2091

Query: 197  WPSGSTYEGQWQSGKRHGLVSKTATGGFIAVNGHKV 304
              S  +  G  Q  +   LV    + GF+  NGH+V
Sbjct: 2092 KESPDSI-GDPQGRQTAVLVE---SDGFVTKNGHRV 2123


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 122  CTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYE 220
            C     QG Y   ++F FE   V  +    TY+
Sbjct: 1537 CQNATRQGGYFDQYSFNFEYKDVSNYAKNLTYQ 1569


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 752,067
Number of Sequences: 2352
Number of extensions: 18649
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)