Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0221.Seq
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical pr... 152 2e-37
AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin ... 152 2e-37
X70832-1|CAA50180.1| 500|Caenorhabditis elegans Cytoplasmic int... 32 0.37
AF047657-10|AAK18940.2| 500|Caenorhabditis elegans Intermediate... 32 0.37
Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical pr... 31 0.65
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet... 31 0.65
Z68302-4|CAB54515.1| 521|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical ... 30 1.1
U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 30 1.5
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 30 1.5
U20864-8|AAC46665.2| 330|Caenorhabditis elegans Peroxisome asse... 29 2.0
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 29 2.6
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 29 2.6
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 29 2.6
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 3.5
Z70781-5|CAE17848.1| 78|Caenorhabditis elegans Hypothetical pr... 28 4.6
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 28 4.6
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 28 4.6
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 28 4.6
Z73969-12|CAE17697.1| 73|Caenorhabditis elegans Hypothetical p... 28 6.1
AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein. 28 6.1
AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineag... 28 6.1
>Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical
protein T22C1.7 protein.
Length = 747
Score = 152 bits (369), Expect = 2e-37
Identities = 58/72 (80%), Positives = 69/72 (95%)
Frame = +2
Query: 38 LNGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTY 217
+NGGRFDFDDGGTY G W++GKAHGHGVCTGP+A+G YAG+W++GFEVSGVYTWPSG+TY
Sbjct: 1 MNGGRFDFDDGGTYVGGWEEGKAHGHGVCTGPQAKGEYAGAWHYGFEVSGVYTWPSGNTY 60
Query: 218 EGQWQSGKRHGL 253
+GQWQ+GKRHGL
Sbjct: 61 QGQWQNGKRHGL 72
Score = 142 bits (344), Expect = 2e-34
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Frame = +1
Query: 205 WEHLRRTMAEWKTAR---IGVENRDRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANG 375
W +W+ + +G+E R RW+Y+GEWTQG KGRYGVRQS S A+Y+GTW+ G
Sbjct: 54 WPSGNTYQGQWQNGKRHGLGIEQRGRWLYKGEWTQGYKGRYGVRQSANSQARYQGTWSAG 113
Query: 376 FQDGYGSETYADGGTYQGQWMRGCRHGYGVRTSAPFGLASHYRA-GRAITAARCLRSRKL 552
F DGYG+E Y D G+YQGQW+RG RHGYG+R S + A+ +R+ + + LRS ++
Sbjct: 114 FHDGYGTEIYVDSGSYQGQWLRGMRHGYGIRKSTTYEKAAKFRSKSQTHASLTSLRSGRV 173
Query: 553 AAPRILRKGRTNRMDDARGGF 615
+ R RGGF
Sbjct: 174 EEENAAEEHRHKEGLSGRGGF 194
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = +1
Query: 268 DRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGC 447
D Y G W +G +GV + +Y G W GF+ G T+ G TYQGQW G
Sbjct: 10 DGGTYVGGWEEGKAHGHGVCTGPQAKGEYAGAWHYGFEVS-GVYTWPSGNTYQGQWQNGK 68
Query: 448 RHGYGV 465
RHG G+
Sbjct: 69 RHGLGI 74
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 YCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVS-GVYTWPSGSTYEGQWQSGKRHGL 253
Y G W G +GV +Q Y G+W+ GF G + +Y+GQW G RHG
Sbjct: 82 YKGEWTQGYKGRYGVRQSANSQARYQGTWSAGFHDGYGTEIYVDSGSYQGQWLRGMRHGY 141
Query: 254 VSKTAT 271
+ +T
Sbjct: 142 GIRKST 147
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/83 (31%), Positives = 37/83 (44%)
Frame = +1
Query: 256 VENRDRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQW 435
VE Y GEW + +GV + + KY+G WAN + GYG T+ DG +G++
Sbjct: 275 VEESSIETYMGEWKNDMRSGFGVCERS-DGLKYQGEWANNAKCGYGVTTFKDGTKEEGRY 333
Query: 436 MRGCRHGYGVRTSAPFGLASHYR 504
R F AS +R
Sbjct: 334 KNNILIASSRRKGVIFMRASKFR 356
Score = 37.5 bits (83), Expect = 0.008
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = +2
Query: 74 TYCGSWDDGKAHGHGVC---TGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYEGQWQSGKR 244
TY G W + G GVC G K QG +A + G+ GV T+ G+ EG++ K
Sbjct: 282 TYMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGY---GVTTFKDGTKEEGRY---KN 335
Query: 245 HGLVSKTATGGFIAVNGHKV-PKADTAYDRA-QLATPSMKAHGLTDFKTATALKHTPMVA 418
+ L++ + G I + K K + A A + A+ + + + +T+TA + + +
Sbjct: 336 NILIASSRRKGVIFMRASKFREKLEQALGAASRAASIAQQKADIAASRTSTARERSEQAS 395
Query: 419 HI 424
I
Sbjct: 396 FI 397
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 391 GSETYADGGTYQGQWMRGCRHGYGVRT 471
G + DGGTY G W G HG+GV T
Sbjct: 4 GRFDFDDGGTYVGGWEEGKAHGHGVCT 30
>AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin
protein.
Length = 747
Score = 152 bits (369), Expect = 2e-37
Identities = 58/72 (80%), Positives = 69/72 (95%)
Frame = +2
Query: 38 LNGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTY 217
+NGGRFDFDDGGTY G W++GKAHGHGVCTGP+A+G YAG+W++GFEVSGVYTWPSG+TY
Sbjct: 1 MNGGRFDFDDGGTYVGGWEEGKAHGHGVCTGPQAKGEYAGAWHYGFEVSGVYTWPSGNTY 60
Query: 218 EGQWQSGKRHGL 253
+GQWQ+GKRHGL
Sbjct: 61 QGQWQNGKRHGL 72
Score = 142 bits (344), Expect = 2e-34
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Frame = +1
Query: 205 WEHLRRTMAEWKTAR---IGVENRDRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANG 375
W +W+ + +G+E R RW+Y+GEWTQG KGRYGVRQS S A+Y+GTW+ G
Sbjct: 54 WPSGNTYQGQWQNGKRHGLGIEQRGRWLYKGEWTQGYKGRYGVRQSANSQARYQGTWSAG 113
Query: 376 FQDGYGSETYADGGTYQGQWMRGCRHGYGVRTSAPFGLASHYRA-GRAITAARCLRSRKL 552
F DGYG+E Y D G+YQGQW+RG RHGYG+R S + A+ +R+ + + LRS ++
Sbjct: 114 FHDGYGTEIYVDSGSYQGQWLRGMRHGYGIRKSTTYEKAAKFRSKSQTHASLTSLRSGRV 173
Query: 553 AAPRILRKGRTNRMDDARGGF 615
+ R RGGF
Sbjct: 174 EEENAAEEHRHKEGLSGRGGF 194
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = +1
Query: 268 DRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGC 447
D Y G W +G +GV + +Y G W GF+ G T+ G TYQGQW G
Sbjct: 10 DGGTYVGGWEEGKAHGHGVCTGPQAKGEYAGAWHYGFEVS-GVYTWPSGNTYQGQWQNGK 68
Query: 448 RHGYGV 465
RHG G+
Sbjct: 69 RHGLGI 74
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 YCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVS-GVYTWPSGSTYEGQWQSGKRHGL 253
Y G W G +GV +Q Y G+W+ GF G + +Y+GQW G RHG
Sbjct: 82 YKGEWTQGYKGRYGVRQSANSQARYQGTWSAGFHDGYGTEIYVDSGSYQGQWLRGMRHGY 141
Query: 254 VSKTAT 271
+ +T
Sbjct: 142 GIRKST 147
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/83 (31%), Positives = 37/83 (44%)
Frame = +1
Query: 256 VENRDRWIYRGEWTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQW 435
VE Y GEW + +GV + + KY+G WAN + GYG T+ DG +G++
Sbjct: 275 VEESSIETYMGEWKNDMRSGFGVCERS-DGLKYQGEWANNAKCGYGVTTFKDGTKEEGRY 333
Query: 436 MRGCRHGYGVRTSAPFGLASHYR 504
R F AS +R
Sbjct: 334 KNNILIASSRRKGVIFMRASKFR 356
Score = 37.5 bits (83), Expect = 0.008
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = +2
Query: 74 TYCGSWDDGKAHGHGVC---TGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYEGQWQSGKR 244
TY G W + G GVC G K QG +A + G+ GV T+ G+ EG++ K
Sbjct: 282 TYMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGY---GVTTFKDGTKEEGRY---KN 335
Query: 245 HGLVSKTATGGFIAVNGHKV-PKADTAYDRA-QLATPSMKAHGLTDFKTATALKHTPMVA 418
+ L++ + G I + K K + A A + A+ + + + +T+TA + + +
Sbjct: 336 NILIASSRRKGVIFMRASKFREKLEQALGAASRAASIAQQKADIAASRTSTARERSEQAS 395
Query: 419 HI 424
I
Sbjct: 396 FI 397
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 391 GSETYADGGTYQGQWMRGCRHGYGVRT 471
G + DGGTY G W G HG+GV T
Sbjct: 4 GRFDFDDGGTYVGGWEEGKAHGHGVCT 30
>X70832-1|CAA50180.1| 500|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 500
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = +1
Query: 292 WTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGCRHGYGV 465
+ S G G R ST A T NG+ GY + Y GG G + RG G V
Sbjct: 384 YVSNSTGAAGYRSST-HVATTTTTTTNGYSSGYTAGGYTSGGYTTGGYTRGITAGGAV 440
>AF047657-10|AAK18940.2| 500|Caenorhabditis elegans Intermediate
filament, c protein 1 protein.
Length = 500
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = +1
Query: 292 WTQGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGCRHGYGV 465
+ S G G R ST A T NG+ GY + Y GG G + RG G V
Sbjct: 384 YVSNSTGAAGYRSST-HVATTTTTTTNGYSSGYTAGGYTSGGYTTGGYTRGITAGGAV 440
>Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical
protein F35B12.7 protein.
Length = 80
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +1
Query: 364 WANGFQDGYGSETYADG---GTYQGQWMRGCRHGYGVRTSAPFGLASHYRAGRAITA 525
W G GYG Y G G Y G RG GYG R +G Y G + A
Sbjct: 21 WGGGPYGGYGPRGYGGGYGGGRYGGYGGRGPYGGYGGRGPYGYGGRGPYGGGGLVGA 77
>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
protein 3 protein.
Length = 1599
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 615 ETTSGVVHTVGSAFPKDPRRCQLP*AKTSSRGDGATGPVMRR 490
+ S + T S P DP+ Q P A T+S G G+ P R+
Sbjct: 915 DDASDITGTTRSRLPTDPKSLQPPAASTASTGSGSFVPHQRK 956
>Z68302-4|CAB54515.1| 521|Caenorhabditis elegans Hypothetical
protein ZK792.8 protein.
Length = 521
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 286 GEWTQGSKGRYGVRQ-STISNAKYEGTWANGFQDGYGSE 399
GE + SK ++ R ST +N KY TW + D YG E
Sbjct: 107 GEIEKHSKKKWKARLWSTWNNIKYSSTWMSDRSDEYGGE 145
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = +2
Query: 44 GGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYEG 223
GG GG Y G + + G +G + + G ++ G + S S S+ G
Sbjct: 339 GGEASSSSGGGYSGGGESSSSGGSSYSSGGDSSSSSGGGYSSGGDSS------SSSSSSG 392
Query: 224 QWQSGKRHGLVSKTATGGFIAVNG 295
+ G S +++GG+ + G
Sbjct: 393 GYSGGSDSSSSSSSSSGGYSSGGG 416
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = +2
Query: 44 GGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYEG 223
GG GG Y G + + G +G + + G ++ G + S S S+ G
Sbjct: 339 GGEASSSSGGGYSGGGESSSSGGSSYSSGGDSSSSSGGGYSSGGDSS------SSSSSSG 392
Query: 224 QWQSGKRHGLVSKTATGGFIAVNG 295
+ G S +++GG+ + G
Sbjct: 393 GYSGGSDSSSSSSSSSGGYSSGGG 416
>AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical
protein Y39B6A.9 protein.
Length = 230
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +1
Query: 298 QGSKGRYGVRQSTISNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGCRHGYGVRTSA 477
QG+ G Y + + +A G + G+G E + G G G + Y S
Sbjct: 62 QGAYGHYDGKYGEAGKKSGQEYYAKGDEHGHGDEAHEKGLKKNGDAYGGKKFSYFTSGSG 121
Query: 478 PFG 486
P+G
Sbjct: 122 PYG 124
>U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical
protein F12A10.1 protein.
Length = 120
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 325 RQSTISNAKYEGTWANGFQDGYGS---ETYAD-GGTYQGQWMRGCRHGYGVRTSAPFGLA 492
R S S K G W G+ GYG Y+ GG Y G + G YG S+ +G
Sbjct: 46 RSSEGSRVKRWGGWGGGYPGGYGGGYPGGYSGYGGGYPGMYGGGMGGSYG---SSSWGSY 102
Query: 493 SHYRAG 510
S R+G
Sbjct: 103 SSSRSG 108
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +1
Query: 295 TQGSKGRYGVRQSTISNAKYEGTWAN---GFQDGYGSETYADGGTYQGQWMRGCRHGYG 462
T+G +G + + Y G+ GF GYG Y GG + G G GYG
Sbjct: 60 TRGQRGPFAAMTGSYGRGGYGGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGG---GYG 115
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = +2
Query: 44 GGRFDFDDGGTYCGSWD-DGKAHGHGVCTGP---KAQGAYAGSWNFGFEVSGVYTWP--S 205
GG F GG Y G+ G A G GP AQG YAG+ G G Y P
Sbjct: 99 GGGFGGAQGG-YAGAGPIGGGAQGGYAGAGPIGGGAQGGYAGAGPIGGGAQGGYAGPIGG 157
Query: 206 GSTYEG 223
G+ Y+G
Sbjct: 158 GAGYQG 163
>U20864-8|AAC46665.2| 330|Caenorhabditis elegans Peroxisome
assembly factor protein13 protein.
Length = 330
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 373 GFQDGYGSETYADGGTYQGQWMRGCRHGYG 462
G+ GYG T+ G Y G M G GYG
Sbjct: 31 GYGGGYGMNTFPGSGMYGGGGMYGGGMGYG 60
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 620 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 679
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 680 QHRRSTQ 686
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 623 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 682
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 683 QHRRSTQ 689
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 620 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 679
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 680 QHRRSTQ 686
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 620 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 679
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 680 QHRRSTQ 686
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 623 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 682
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 683 QHRRSTQ 689
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 620 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 679
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 680 QHRRSTQ 686
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 138 PKEPTP-VLGTSVLKYRASTPGPVGALTKDNGRVENGTDWCRKP-RPVDLSR*MDTRFQR 311
P P V+ ++ +TP P G++T N + W K + R ++R QR
Sbjct: 620 PSTPVSNVMAATISSTAKNTPSPAGSVTTINATFSKPSRWQSKTVTESEAERRNNSRMQR 679
Query: 312 PIRRTTE 332
RR+T+
Sbjct: 680 QHRRSTQ 686
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/80 (27%), Positives = 29/80 (36%)
Frame = +2
Query: 41 NGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYTWPSGSTYE 220
N G F G T + GKA G G G + G G G + GST
Sbjct: 48 NTGGSGFGGGNTGGSGFGGGKAGGSGFGGGNTCGSGFGGGSTGGSPYGGASSGFGGSTAT 107
Query: 221 GQWQSGKRHGLVSKTATGGF 280
+ SG++ +GGF
Sbjct: 108 SGFGSGEKSSAFG--GSGGF 125
>Z70781-5|CAE17848.1| 78|Caenorhabditis elegans Hypothetical
protein F57A8.8 protein.
Length = 78
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 304 SKGRYGVRQSTISNAKYEGTWANGFQD-GYGSETYADGGTYQGQWMRGCRHGYGVRTSAP 480
+ G+Y T S G + G+ + GYG Y G Y G + G +GY + S+
Sbjct: 16 TSGQYYGGYPTASGYYGNGVYGGGYGNVGYGGYGYP--GQYYGGYEYGSPYGYVGKRSSG 73
Query: 481 FG 486
FG
Sbjct: 74 FG 75
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Frame = +2
Query: 41 NGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYT--WPSGST 214
N G F G + GKA G G +G + G+ N G T + SG+
Sbjct: 152 NAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSGFGSGLTNGFGSGNN 211
Query: 215 YEGQWQSGKRHGLVSKTATGGFIAVNGH 298
+E + GK G + G G+
Sbjct: 212 HESGFGGGKSGGFGGGNSGGSGFGSGGN 239
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Frame = +2
Query: 41 NGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYT--WPSGST 214
N G F G + GKA G G +G + G+ N G T + SG+
Sbjct: 152 NAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSGFGSGLTNGFGSGNN 211
Query: 215 YEGQWQSGKRHGLVSKTATGGFIAVNGH 298
+E + GK G + G G+
Sbjct: 212 HESGFGGGKSGGFGGGNSGGSGFGSGGN 239
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Frame = +2
Query: 41 NGGRFDFDDGGTYCGSWDDGKAHGHGVCTGPKAQGAYAGSWNFGFEVSGVYT--WPSGST 214
N G F G + GKA G G +G + G+ N G T + SG+
Sbjct: 152 NAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSGFGSGLTNGFGSGNN 211
Query: 215 YEGQWQSGKRHGLVSKTATGGFIAVNGH 298
+E + GK G + G G+
Sbjct: 212 HESGFGGGKSGGFGGGNSGGSGFGSGGN 239
>Z73969-12|CAE17697.1| 73|Caenorhabditis elegans Hypothetical
protein C12D8.16 protein.
Length = 73
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 340 SNAKYEGTWANGFQDGYGSETYADGGTYQGQWMRGCRHGYGVRTSAPFGLASH 498
++A+Y G ++ + YG Y G Y G + GY + A FGL +
Sbjct: 21 ASAQYYGYASSYYPSYYGGYGYGAYGAYGGYGLGSAYAGYYGKREAGFGLTQN 73
>AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein.
Length = 435
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 208 EHLRRTMAEWKTARIGVENRDRWIYRGEWTQGSKGRYGVRQSTISNAK 351
E + M WK A ++ +Y G W S GR +Q S+AK
Sbjct: 344 EAKEKEMRIWKLAPFETPKKEVPLYSGRWLVISTGRTLAQQELFSDAK 391
>AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineage
defect protein 2 protein.
Length = 435
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 208 EHLRRTMAEWKTARIGVENRDRWIYRGEWTQGSKGRYGVRQSTISNAK 351
E + M WK A ++ +Y G W S GR +Q S+AK
Sbjct: 344 EAKEKEMRIWKLAPFETPKKEVPLYSGRWLVISTGRTLAQQELFSDAK 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,335
Number of Sequences: 27780
Number of extensions: 402480
Number of successful extensions: 1454
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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