Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0220.Seq
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    29   0.69 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.2  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   6.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.4  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   8.5  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 119 TSNVAIRMLPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAH 298
           T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L   
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQLLGP 264

Query: 299 L--DTHRRXCDRILILNRR 349
           L  D   +  +  L LN+R
Sbjct: 265 LYEDIFNKNQEFSLKLNKR 283


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 646 RRANTHSRHGEVVTKNNDTGTLTRPRNRNEYTL-NILT 536
           R  +T SR    VTK+N++  + RP   N +TL N+LT
Sbjct: 369 RGFHTSSRVLNTVTKSNNSKPIQRPLRENIFTLPNLLT 406


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 159 IGITGSIRIATLEVKFLDRRKTNISESICQRCFHQSRTKVRGSKAI 22
           +G  GS  +    +K+ +R + +    +C +C+    TKV+  +AI
Sbjct: 145 LGNWGSESLKERSLKYSNRLQASNDTGVCVKCYGGMETKVQVCQAI 190


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 656 PWDVVARFLQASLSGNRNPDSPF 724
           PWD +     A+L GN + + PF
Sbjct: 660 PWDAIEEASYANLRGNTDVEQPF 682


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 151 NWEHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 44
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 144 SIRIATLEVKFLDRRKTNISESICQRCFHQSRTKVRGSKA 25
           S +IA   +   D +KT+I   +   CF  +  K  G KA
Sbjct: 402 SKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKA 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,543
Number of Sequences: 5004
Number of extensions: 60713
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)