Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0220.Seq
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 31 1.3
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 30 2.2
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 29 2.9
02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281... 29 2.9
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 29 5.1
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121... 29 5.1
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 28 6.7
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 28 6.7
05_01_0127 - 863755-865182 28 6.7
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 28 6.7
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 28 8.8
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 8.8
01_05_0005 - 16886553-16886946,16887079-16887404 28 8.8
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 700 PGEGSLKKTGYHIPRKGSRRANTHSRHGEVVTKNN 596
PGEGS K H PR+ R+ N EV K+N
Sbjct: 89 PGEGSKKDEMRHTPREERRKDNMRDMQREVSKKDN 123
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 694 EGSLKKTGYHIPRKGSRRANTHSRH--GEVVTKNNDTGTLTRPRNRNEYTLNILTRNNW 524
EG+ + H R+ +R ++ RH G K+ TRPR R + L ++W
Sbjct: 628 EGTAAPSCRHRSRRTDKRPSSSGRHGSGRTANKHERPAPATRPRQRRKRKYLYLVMDDW 686
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 134 IRMLPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTH 310
I+M+P P H+L N + P YSS+I F H+N F + L TH
Sbjct: 53 IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109
>02_01_0389 -
2816878-2817390,2817552-2817670,2817803-2817865,
2818229-2818355,2818607-2818827,2818973-2819136,
2819766-2819846,2820657-2820728,2820857-2820995,
2821206-2821690,2821995-2822550,2822610-2822666,
2822705-2822774
Length = 888
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 622 AGSGYLRACCLSLGCGSPFSSGFPLR 699
A + YL+ C ++ G G+PF SG LR
Sbjct: 168 APADYLQVCLVNKGTGTPFISGLDLR 193
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 158 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFE 262
I H L +LK KI P +I C +YS S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853
>03_03_0053 +
14109636-14109948,14110075-14110302,14112030-14112181,
14112305-14112578,14112687-14112739
Length = 339
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 146 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
P+ + YLG+ NK+ P+ Y + C K+ + FS++ H++ K
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLND-FSKY-HNHALK 289
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +2
Query: 146 PVIPINHYLGVLKTNKIEPRSYSIIP------CTKYSSSIFSRFEHSNLFKVKLSAHLDT 307
P I ++++ GVL T K PR+ ++P K +F+ L +V +
Sbjct: 352 PSITVSNHNGVLFTTKKHPRTKELMPEDFWFSAPKKGIMVFALPGEPGLTEVAGDFKIQF 411
Query: 308 HRRXCDRILILNRRFLERRLT 370
H R D LN +E R+T
Sbjct: 412 HDRQGDFYCWLNTTMMENRVT 432
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 534 LVKIFKVYSFRLRGLVRVPVSLFFVTT--SPCRE 629
LVK K R++G VR+P + +TT SPC E
Sbjct: 50 LVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGE 83
>05_01_0127 - 863755-865182
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 340 EPAFFRTPAHRRYAPQTCQYHRGCVPPTARRTNATTSFLTA 462
E FF P HR RGC PP A R T + +A
Sbjct: 75 ELLFFAPPDHRNTTTFYACSLRGCEPPAAARELLTIDYFSA 115
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 534 LVKIFKVYSFRLRGLVRVPVSLFFVTT--SPCRE 629
LVK K R++G VR+P + +TT SPC E
Sbjct: 47 LVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGE 80
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 534 LVKIFKVYSFRLRGLVRVPVSLFFVTT--SPCRE 629
LVK K S +++G VR+P + +TT SPC E
Sbjct: 48 LVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGE 81
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 634 YLRACCLSLGCGSPFSSGFPLR 699
+L+ C ++ G G+PF SG LR
Sbjct: 161 FLQVCLVNTGAGTPFISGLDLR 182
>01_05_0005 - 16886553-16886946,16887079-16887404
Length = 239
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 459 RNNFSIRYWSWNYRGC 506
R+N S RYW W GC
Sbjct: 90 RSNSSFRYWRWQPHGC 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,808,850
Number of Sequences: 37544
Number of extensions: 421971
Number of successful extensions: 1130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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