Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0220.Seq
         (736 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093081-1|AAH93081.1|  938|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    30   9.9  
BC078667-1|AAH78667.1|  919|Homo sapiens DDX42 protein protein.        30   9.9  
BC015505-1|AAH15505.1|  819|Homo sapiens DDX42 protein protein.        30   9.9  
BC008208-1|AAH08208.1|  208|Homo sapiens DDX42 protein protein.        30   9.9  
AB036090-1|BAC66466.1|  938|Homo sapiens RNA helicase-related pr...    30   9.9  

>BC093081-1|AAH93081.1|  938|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 42 protein.
          Length = 938

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 730 TGKRGIRVPIPGEGSLKKTGYHIPRKGSRRANTHSRHGE 614
           TG R    P  G+G     GY  P   SR  + H RHGE
Sbjct: 824 TGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGH-RHGE 861


>BC078667-1|AAH78667.1|  919|Homo sapiens DDX42 protein protein.
          Length = 919

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 730 TGKRGIRVPIPGEGSLKKTGYHIPRKGSRRANTHSRHGE 614
           TG R    P  G+G     GY  P   SR  + H RHGE
Sbjct: 805 TGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGH-RHGE 842


>BC015505-1|AAH15505.1|  819|Homo sapiens DDX42 protein protein.
          Length = 819

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 730 TGKRGIRVPIPGEGSLKKTGYHIPRKGSRRANTHSRHGE 614
           TG R    P  G+G     GY  P   SR  + H RHGE
Sbjct: 705 TGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGH-RHGE 742


>BC008208-1|AAH08208.1|  208|Homo sapiens DDX42 protein protein.
          Length = 208

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 730 TGKRGIRVPIPGEGSLKKTGYHIPRKGSRRANTHSRHGE 614
           TG R    P  G+G     GY  P   SR  + H RHGE
Sbjct: 94  TGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGH-RHGE 131


>AB036090-1|BAC66466.1|  938|Homo sapiens RNA helicase-related
           protein protein.
          Length = 938

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 730 TGKRGIRVPIPGEGSLKKTGYHIPRKGSRRANTHSRHGE 614
           TG R    P  G+G     GY  P   SR  + H RHGE
Sbjct: 824 TGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGH-RHGE 861


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,804,890
Number of Sequences: 237096
Number of extensions: 2246855
Number of successful extensions: 6064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6047
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)