Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0220.Seq
         (736 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010069-1|AAQ22538.1|  314|Drosophila melanogaster LD13050p pro...    29   8.7  
AF253528-2|AAF71285.1|  314|Drosophila melanogaster proteolipid ...    29   8.7  
AE014296-3552|AAN12170.1|  314|Drosophila melanogaster CG7540-PB...    29   8.7  
AE014296-3551|AAF51736.1|  314|Drosophila melanogaster CG7540-PA...    29   8.7  

>BT010069-1|AAQ22538.1|  314|Drosophila melanogaster LD13050p
           protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 664 IPRKGSRRANTHSRHGEVVTKNN---DTGTLTRPRNRNEY--TLNILTRNNWRA 518
           +P KG+ R        E++ + N   D G LTR  N N Y  T+    RN++R+
Sbjct: 1   MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRNSYRS 54


>AF253528-2|AAF71285.1|  314|Drosophila melanogaster proteolipid
           protein M6-2 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 664 IPRKGSRRANTHSRHGEVVTKNN---DTGTLTRPRNRNEY--TLNILTRNNWRA 518
           +P KG+ R        E++ + N   D G LTR  N N Y  T+    RN++R+
Sbjct: 1   MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRNSYRS 54


>AE014296-3552|AAN12170.1|  314|Drosophila melanogaster CG7540-PB,
           isoform B protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 664 IPRKGSRRANTHSRHGEVVTKNN---DTGTLTRPRNRNEY--TLNILTRNNWRA 518
           +P KG+ R        E++ + N   D G LTR  N N Y  T+    RN++R+
Sbjct: 1   MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRNSYRS 54


>AE014296-3551|AAF51736.1|  314|Drosophila melanogaster CG7540-PA,
           isoform A protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 664 IPRKGSRRANTHSRHGEVVTKNN---DTGTLTRPRNRNEY--TLNILTRNNWRA 518
           +P KG+ R        E++ + N   D G LTR  N N Y  T+    RN++R+
Sbjct: 1   MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRNSYRS 54


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,894,424
Number of Sequences: 53049
Number of extensions: 710043
Number of successful extensions: 2109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)