Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0220.Seq
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U13643-7|AAL56619.1|  182|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U13643-6|AAL56620.1|  180|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z73969-6|CAA98236.1|  295|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 504 CCTRLALQLFLVKIFKVYSFRLRGLVRVPVSLFF-VTTSPCREWVFARLLPFL 659
           CC RL   + L++      F      R+   +FF V+ S  R W    LLPFL
Sbjct: 32  CCRRLKYVIVLIRKLINLHFSASSRDRISNPVFFDVSESRMRRWFSVILLPFL 84


>U13643-7|AAL56619.1|  182|Caenorhabditis elegans Hypothetical
           protein T07E3.6a protein.
          Length = 182

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 619 RAGSGYLRACCLSLGCGSPFSSGFPLRESEP*FPVYP 729
           R      R  CLSLGC   F S    + SE  FP  P
Sbjct: 50  REAESKTREICLSLGCAHSFYSTCASQPSEQAFPALP 86


>U13643-6|AAL56620.1|  180|Caenorhabditis elegans Hypothetical
           protein T07E3.6b protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 619 RAGSGYLRACCLSLGCGSPFSSGFPLRESEP*FPVYP 729
           R      R  CLSLGC   F S    + SE  FP  P
Sbjct: 50  REAESKTREICLSLGCAHSFYSTCASQPSEQAFPALP 86


>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 378 CSANVSVSPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 497
           C  NV + P   + DSA H  N   +N     I    WNY
Sbjct: 211 CLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


>Z73969-6|CAA98236.1|  295|Caenorhabditis elegans Hypothetical
           protein C12D8.8 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 728 G*TGNQGSDSRRGKPEENGLPHPKERQQARKYPLPARGGSDEK*RYG 588
           G  GN G     G P ENG P      Q+ K   P R G+D K  YG
Sbjct: 176 GPRGNDGFPGLPGPPGENGQP-----GQSGKDGQPGRNGADGKRGYG 217


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 188 NKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHRRXCDRILILNRRFLERRL 367
           NKIE  S  +    K  + + S  E        L  H++T +R  + +   N   LE+R+
Sbjct: 110 NKIEEMSVEVDAAHKKVNEVLSEVEQLRATNFDLQMHIETAKRTMEELADCNEE-LEKRV 168

Query: 368 TD 373
            +
Sbjct: 169 DE 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,991
Number of Sequences: 27780
Number of extensions: 357908
Number of successful extensions: 1106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)