Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0220.Seq
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.2  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.9  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 441 NYELFNRNNFSIRYWSWNYRGCCTRL 518
           N  + N NN+   Y + NY   C +L
Sbjct: 87  NRTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 441 NYELFNRNNFSIRYWSWNYRGCCTRL 518
           N  + N NN+   Y + NY   C +L
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 441 NYELFNRNNFSIRYWSWNYRGCCTRL 518
           N  + N NN+   Y + NY   C +L
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 441 NYELFNRNNFSIRYWSWNYRGCCTRL 518
           N  + N NN+   Y + NY   C +L
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKL 112


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 105  RRKTNISESICQRCFHQ 55
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 441 NYEL-FNRNNFSIRYWSWNYRGCCTRL 518
           NY+  +N NN++   ++ NY   C +L
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNNCKKL 354


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 497
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 497
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 497
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 497
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 497
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,055
Number of Sequences: 438
Number of extensions: 5309
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)