Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0220.Seq
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR...    30   1.8  
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf...    30   1.8  
At1g72410.1 68414.m08374 COP1-interacting protein-related simila...    29   3.2  
At4g29770.1 68417.m04239 expressed protein                             29   4.2  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   7.4  
At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138...    28   7.4  
At4g10890.1 68417.m01772 expressed protein                             27   9.8  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    27   9.8  

>At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 986

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 596 VIFRHYLPVPGVGICAPAAFPWDVVARFLQASLSGN 703
           +++  Y  V  VGIC PA      +AR LQ+ LS N
Sbjct: 191 LLYLDYEQVRIVGICGPAGIGKTTIARALQSLLSSN 226


>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 315

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -1

Query: 718 GIRVPIPGEGSLKKTGYHIPRKGSRRA--NTHSRHGEVVTKNND 593
           G+    PG   LKK   HI    +  +  N H  H EV   NND
Sbjct: 14  GLETTPPGSSQLKKPDLHISMNMAMDSGHNNHHHHQEVDNNNND 57


>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
           to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
           thaliana] GI:3327870
          Length = 1163

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 719 GNQGSDSRRGKPEENGLPH--PKERQQARKYPLPARGGS 609
           G+Q S SRRGK  EN + H  P     A +  L   GGS
Sbjct: 586 GDQSSSSRRGKSSENQVAHKEPSHSIAATEKRLSLGGGS 624


>At4g29770.1 68417.m04239 expressed protein
          Length = 277

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 609 TTSPCREWVFARLLPFLGMW*PVFFRLPSPGIGTLIPRLPV 731
           T   C E+ F + LP  G W  V    P P     IPR+P+
Sbjct: 116 TVKDCFEFAFKKGLPRNGHWAHVGCIFPVPPFACQIPRVPM 156


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 514 DLPSNCSSLKYLKCTHSDYE 573
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as '
           auxin-independent growth promoter -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 572

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 712 RVPIPGEGSLKKTGYHIPRKGSR 644
           RV      ++K TG+HIPR G R
Sbjct: 51  RVRYSSNDAIKATGFHIPRAGGR 73


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 1
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 197 EPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHR 313
           EP    ++ C K S    S FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,554
Number of Sequences: 28952
Number of extensions: 327732
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)