Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0216.Seq
         (443 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.43 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.9  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 243 VQPALSVIDVLNKYSHDSDNDVAYNAIFAM-GLVG 344
           +QP   V  VL+K + DSD DV Y+A  A+ G+ G
Sbjct: 558 IQP--QVKPVLDKLTADSDIDVKYSASEAIAGIAG 590


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 412 GDLPWYSASARSIVASLALLVPAPTSPM 329
           G +P  S S  S++     L P PT P+
Sbjct: 72  GAIPVVSLSTCSMLCGSTQLWPQPTGPV 99


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 437 QPHHEQVH 414
           QPHH+Q H
Sbjct: 180 QPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 437 QPHHEQVH 414
           QPHH+Q H
Sbjct: 182 QPHHQQQH 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,683
Number of Sequences: 336
Number of extensions: 1170
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)