Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0216.Seq
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    74   1e-14
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   1.3  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   3.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   3.0  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   4.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   6.9  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 249 PALSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
           P + + D L++YSHD+D DVAYNAIFAMGLVGAGT+N            Y+ K    LFM
Sbjct: 683 PQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFM 742

Query: 429 VRLAQ 443
           VR+AQ
Sbjct: 743 VRIAQ 747



 Score = 65.3 bits (152), Expect = 4e-12
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = +1

Query: 85  SSVQAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
           +++Q  A LGVA IA+ E+ GAEM  R F  +  YGEP +R+A+PLA+ L S SNP
Sbjct: 628 TTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNP 683


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 215 TARRTTGSPYLPSCPKMRVHISAPVSSANAMTATP 111
           T +RTT SP +PS    R H  +P S ++ +   P
Sbjct: 161 TEQRTTSSPTIPSYAN-RTHTDSPTSLSHRLPNVP 194


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 VIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTN 356
           VI VL+K  +  D DV  +A++A+  +  G N
Sbjct: 249 VIPVLSKLIYTLDEDVLVDALWAISYLSDGAN 280


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 245 DTEHRAMASGTARRTTGSPYLPS 177
           +T ++A+ S ++ R+ G PY PS
Sbjct: 97  NTSYQAIPSSSSNRSRGGPYTPS 119


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 83  CPRCKPWRPLASRSSHWQRKRAPKCAPASSDNWVGTG 193
           CP CK +RP   R   W   R PK      + + G G
Sbjct: 713 CPGCKAFRPATKRLEIW---RLPKILVIHLNRFSGHG 746


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 230 AMASGTARRTTGSPYLPSCPKMRVHISAPVSSANAMTATPRVATACT 90
           A A+ ++ +   S  LPS        S P+SSAN+ TAT   +T  T
Sbjct: 267 ASATSSSAQYNTSSLLPSSTPS----STPLSSANSTTATSASSTPLT 309


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 86  PRCKPWRPLA-SRSSHWQRKRAPKCAPASSDN 178
           P  KP    A S  + WQ+  AP+ APA S N
Sbjct: 425 PWAKPASSAAPSNPAPWQQPAAPQSAPALSMN 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,953
Number of Sequences: 5004
Number of extensions: 18606
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)