Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0216.Seq
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 62 2e-10
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 61 3e-10
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 60 8e-10
11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402 29 1.7
08_02_1623 - 28314402-28315094 27 5.1
04_01_0095 - 991086-991487,992745-992903 27 6.8
01_07_0355 - 42973861-42974303,42974821-42974925,42975338-429754... 27 9.0
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 62.1 bits (144), Expect = 2e-10
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +3
Query: 249 PALSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P ++V+D L++ SHD+D DV+ AI ++G +GAGTNN Y+ K HLF
Sbjct: 691 PKVNVMDTLSRLSHDADADVSMAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFC 750
Query: 429 VRLAQ 443
VR+AQ
Sbjct: 751 VRIAQ 755
Score = 61.7 bits (143), Expect = 3e-10
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 94 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
Q A LG+A+IA+AEE GAEM R +L +YGE +RRAVPLA+ + +SNP
Sbjct: 639 QGPAVLGIALIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNP 691
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 273 LNKYSHDSDNDVAYNAIFAMGLVGAGTNN 359
L+KY H +D V A+ +G+V G N
Sbjct: 440 LDKYLHSNDAHVVAGALLGIGIVTCGVKN 468
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 61.3 bits (142), Expect = 3e-10
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 94 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
Q A LG+++IA+AEE GAEM R +L +YGE +RRAVPLA+ L +SNP
Sbjct: 642 QGPAVLGISLIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNP 694
Score = 60.1 bits (139), Expect = 8e-10
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +3
Query: 249 PALSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P ++V+D +++ SHD+D +V+ AI ++GL+GAGTNN Y+ K HLF
Sbjct: 694 PKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFC 753
Query: 429 VRLAQ 443
VR+AQ
Sbjct: 754 VRIAQ 758
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 60.1 bits (139), Expect = 8e-10
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +1
Query: 94 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
Q A LG+++I++AEE GAEM R +L +YGE +RRAVPLA+ L +SNP
Sbjct: 679 QGPAVLGISLISMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNP 731
Score = 60.1 bits (139), Expect = 8e-10
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +3
Query: 249 PALSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
P ++V+D +++ SHD+D +V+ AI ++GL+GAGTNN Y+ K HLF
Sbjct: 731 PKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFC 790
Query: 429 VRLAQ 443
VR+AQ
Sbjct: 791 VRIAQ 795
>11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402
Length = 154
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 245 DTEHRAMASGTARRTTGSPYLPSCPKMRVHISAPVSSANAMTA 117
D E +A A A P LPS P+ R+ + A V+S + +TA
Sbjct: 34 DEEEKAPAGSGAAIAAARPLLPSSPRSRIEM-AMVNSPSGVTA 75
>08_02_1623 - 28314402-28315094
Length = 230
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 248 LDTEHRAMASGTARRTTGSPYLPSCPKMRVHISAPVSSANAMTATPRVATACT 90
L T + A+ + A + C ++ + ++A + A ATP VAT C+
Sbjct: 81 LGTFNTALDAARAYDSAARALYGDCARLNLLLAAATAGAPPAAATPSVATPCS 133
>04_01_0095 - 991086-991487,992745-992903
Length = 186
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 358 LLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESAGW 245
+ V +SP+ M + A + S W ++T +S GW
Sbjct: 1 MAVNTTSSPLCGMTVVAATSSTPWPSAVATGFGQSLGW 38
>01_07_0355 -
42973861-42974303,42974821-42974925,42975338-42975461,
42975601-42975743,42975896-42976031,42976112-42976434,
42976942-42976999
Length = 443
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 165 AGAHFGARFLCQCDDRDAKGRHGLHR 88
AGAH A QC DAK R +H+
Sbjct: 362 AGAHKAAALALQCLSADAKNRPTMHQ 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,616,150
Number of Sequences: 37544
Number of extensions: 166223
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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