Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0216.Seq
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)                35   0.026
SB_38834| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.026
SB_40070| Best HMM Match : Basic (HMM E-Value=3.4)                     27   5.3  
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 88  SVQAVATLGVAVIALAEETGAEMCTRIFGQL 180
           S Q +A LG+A+IA+ EE GA+M  R F  L
Sbjct: 608 SHQGIAVLGIALIAMGEEIGAQMGLRAFNHL 638



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 273 LNKYSHDSDNDVAYNAIFAMGLVGAGTNN 359
           ++KY + SD+ +   A+ A G+V +G  N
Sbjct: 428 IDKYLYSSDDYIKAGALLACGIVNSGVRN 456


>SB_38834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 88  SVQAVATLGVAVIALAEETGAEMCTRIFGQL 180
           S Q +A LG+A+IA+ EE GA+M  R F  L
Sbjct: 46  SHQGIAVLGIALIAMGEEIGAQMGLRAFNHL 76


>SB_40070| Best HMM Match : Basic (HMM E-Value=3.4)
          Length = 96

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 WQRKRAPKCAPASSDNWVGTG 193
           W  ++  +C P + DNW  TG
Sbjct: 16  WLLRKNARCLPVAFDNWASTG 36


>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 278 IEHVDDGECGLDTEHRAMASGTAR-RTTGSPYLPSCPKMRVHISAPVSSANAMTAT 114
           ++HV D   G+D E R+ AS TAR    G+   PS P M  H +  +++A   +AT
Sbjct: 100 VQHVTDP--GIDREVRSKASATARVHAEGAAPAPS-PLM--HAAHSMTAAGTASAT 150


>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 86  PRCKPWRPLASRSSHWQRKRAPKCAPASSDNWVG 187
           P C+ W     R ++W+RK   +C      +W G
Sbjct: 217 PHCQNWLSSNLRLTNWKRKLGCRCQYKHIVDWCG 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,599,826
Number of Sequences: 59808
Number of extensions: 169598
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)