Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0216.Seq
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    79   1e-15
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    31   0.38 
AF002197-4|AAD34659.1|  393|Caenorhabditis elegans Hypothetical ...    27   4.6  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 36/57 (63%), Positives = 47/57 (82%)
 Frame = +1

Query: 82  LSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPVVRRAVPLAIALCSVSNP 252
           LSS QAVA LG+ +IA+ ++ G++M  R+FG L RYGEPV+RRAVPLA++L SVSNP
Sbjct: 705 LSSQQAVAVLGIGLIAMGDDIGSQMALRMFGHLIRYGEPVIRRAVPLALSLLSVSNP 761



 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 35/65 (53%), Positives = 44/65 (67%)
 Frame = +3

Query: 249 PALSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFM 428
           P L++++ L+K+SHDSD D A+NAIFAMGLVGAGTNN            YH K  V L +
Sbjct: 761 PQLNILETLSKFSHDSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLASYHYKDQVSLML 820

Query: 429 VRLAQ 443
           VR+AQ
Sbjct: 821 VRIAQ 825


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 263 DGECGLDTEHRAMASGTARRTTGSPYLPSCPKMRVHISAPVSSANAM 123
           DGEC     H  + S TAR   G P L  C +    + A  SSA  +
Sbjct: 291 DGECEHKPHHSVVHSSTARMCVGRPGLAYCRQKCRALDASESSARCL 337


>AF002197-4|AAD34659.1|  393|Caenorhabditis elegans Hypothetical
           protein F20H11.6 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 200 TGSPYLPSCPKMRVHISAPVSSANAMTATP 111
           T SP++ S    R H S+P SSA+  T  P
Sbjct: 240 TVSPHITSSLTQRSHTSSPASSASEGTVVP 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,377,318
Number of Sequences: 27780
Number of extensions: 118580
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)