Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0215.Seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    69   5e-13
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    28   1.5  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   2.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   3.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   7.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   7.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   7.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   7.8  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +1

Query: 7   TAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA-TNGAQ 183
           T   S+  NR  ++   + FL G ++ YV+ MY+AW  DPNSVHASW A+F+N    G  
Sbjct: 28  TCLSSLQQNRTFATQPTDDFLTGGAADYVDEMYDAWKKDPNSVHASWQAYFKNVQERGVS 87

Query: 184 PGAAYTPPPNL 216
           P  A+  PP L
Sbjct: 88  PSKAFQAPPLL 98



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
 Frame = +3

Query: 324 HLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRKYFNFDEADMDRVF 503
           ++ VQ ++R+YQ+RGH  A +DPLGI       +    P SEL + +++ F E+D++R  
Sbjct: 125 YMKVQLLVRAYQSRGHHLAKLDPLGI------NVNHNRP-SELTL-EHYGFTESDLNRTI 176

Query: 504 KL-PQLRLSAXXXXXXXXXXF*IV--WSKRTATNIGIEFMFINSLEQCNWIRQRMEPP 668
            L P +  +             IV    K    +  +EF  I+S ++ NWI   +E P
Sbjct: 177 HLGPGILPNFREAGRKTMTLREIVETCEKIYCGSFAVEFTHISSRKRSNWILSHLETP 234


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -1

Query: 574  QTIQNFSQRERFFFFADKRS*GSLNTLSMSASSKLKYFLMMSSELGARMPSSGSVAVVMP 395
            QT  N SQR+     + KR          SAS+  + F+  SS  G  MP S S++  + 
Sbjct: 1336 QTYPNISQRQGVNMLSHKRK---------SASTSDRRFVNASSTSGMNMPISSSISAKIS 1386

Query: 394  SGSTSAAR*PR 362
            S   S    PR
Sbjct: 1387 SIQNSTKYSPR 1397


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 445 PSSS*GNISISMKPTWTGYSNSLNYVYRRKRKSAPVERNSESFGA 579
           PSSS    +I+ +PT +  +N+ ++  R+ R SA   R+ E F A
Sbjct: 631 PSSSINLANITSRPTNSSAANTPSWGVRKARASALNARSEEDFPA 675


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 589 AVRLLQTIQNFSQRERFFFFADKRS*GSLNTLSMSASSKLKYFLMMSSELGARMPSS 419
           A+ LLQ     S  +RF  +   ++ G L  LS +++  +K  +M  +  G ++ SS
Sbjct: 174 AISLLQAYATISTNKRFMVYHQTKNSGKLLQLSTNSNKDMKLNIM--NVFGTKVSSS 228


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 463  NISISMKPTWTGYSNSLNYVYRRKRKSAPVERNSESFGASVLQQTSVLSSCS*IP 627
            ++S   K + +  S+    V +R      +++ +++FG+S+  +  VLS C  +P
Sbjct: 1094 DVSNDRKSSLSSVSDKDAAVLQRMGAQLTLQQMAQNFGSSLFSRVPVLSQCLFVP 1148


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   PQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETM-YNAWLADPNSVHASWDAFFRNATNG 177
           P  + +  N N +   +  +   NG++S+ V    Y    ++  S       F    T G
Sbjct: 361 PMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNF--RVTQG 418

Query: 178 AQPGAAYTPPPNLAPYNK 231
           A P   Y PPP + P  K
Sbjct: 419 APPSHTYGPPPPVQPKPK 436


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 61  PFLNGSSSAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGAAYTP 204
           P  N + SA +  +    ++D PN  H   DAF ++ +   QP +A  P
Sbjct: 9   PVGNETKSAALNALPKIKISDSPNRHHNLVDAFMQSPSYSTQPKSAVEP 57


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 505  LNTLSMSASSKLKYFLMMSSELGARMPSS 419
            ++T++ S  SK +YFL+ +     R PSS
Sbjct: 1966 ISTMNRSCDSKCRYFLLTAIANQLRYPSS 1994


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  APPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTR 142
           +P +  P+++APV+ TS   T     + TP  R
Sbjct: 77  SPKKATPAAVAPVEATSAVDTSEAVASMTPNKR 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,769
Number of Sequences: 5004
Number of extensions: 62217
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)