Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0215.Seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898...    60   2e-09
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060...    56   2e-08
06_03_0219 - 18227559-18227858,18227864-18228340                       29   3.5  
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    29   3.5  
08_01_0914 + 9010613-9013316,9013537-9013748                           29   4.6  
12_02_1046 + 25662715-25662884,25663163-25663757                       28   6.0  
10_08_0974 + 21969713-21971914                                         28   8.0  
10_08_0769 + 20452130-20453314                                         28   8.0  

>04_03_0741 +
           19187333-19188868,19189264-19189490,19189578-19189899,
           19190311-19190399,19190882-19191128,19191756-19191884,
           19191967-19192182,19192256-19192379,19192857-19193095
          Length = 1042

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
 Frame = +3

Query: 285 SAGSP-INEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMR 461
           +A SP I+ + I + + +  ++R+YQ  GHL A +DPL +    +P         +++  
Sbjct: 98  AATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPLALEERPIP---------DVLDP 148

Query: 462 KYFNFDEADMDRVFKLPQLRLSAXXXXXXXXXXF*IVWSKRTAT---NIGIEFMFINSLE 632
            ++ F EAD+DR F L   R++              V  +        IG E+M I   E
Sbjct: 149 AFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDRE 208

Query: 633 QCNWIRQRMEPPN 671
           +CNW+R R+E  N
Sbjct: 209 KCNWLRDRIETVN 221



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +1

Query: 46  STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 165
           S   + FL+G+SS Y+E +  AW ADP SV  SWD FFRN
Sbjct: 54  SRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRN 93


>07_03_1795 +
           29603694-29605208,29605423-29605649,29605739-29606071,
           29606229-29606475,29606948-29607076,29607161-29607376,
           29607454-29607577,29608377-29608612
          Length = 1008

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/50 (50%), Positives = 32/50 (64%)
 Frame = +1

Query: 46  STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAA 195
           S   + FL+G+SS Y+E +  AW ADP+SV  SWD FFRN    A P +A
Sbjct: 46  SRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSA 95



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
 Frame = +3

Query: 285 SAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRK 464
           SAG  ++ + I + + +  ++R+YQ  GH+ A +DPL +    +P+        +L +  
Sbjct: 94  SAG--LSGQTIQESMQLLLLVRAYQVNGHMKAKLDPLRLDDRAVPD--------DLDLSL 143

Query: 465 YFNFDEADMDRVFKLPQLRLSAXXXXXXXXXXF*IVWSKRTAT---NIGIEFMFINSLEQ 635
           Y  F EAD+DR F L   R++              + SK        IG E+M I   ++
Sbjct: 144 Y-GFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILSKLEQAYCGPIGYEYMHIPDRDK 202

Query: 636 CNWIRQRMEPPNVTKMN 686
           CNW+R ++E   + + N
Sbjct: 203 CNWLRDKIETAKLKEYN 219



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 521 FIGEKEKALPLREILNRLEQAYCNKHRY 604
           F+ +    L LREIL++LEQAYC    Y
Sbjct: 165 FLSDNRPVLTLREILSKLEQAYCGPIGY 192


>06_03_0219 - 18227559-18227858,18227864-18228340
          Length = 258

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 47  PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 205
           PPRR PS  +    +SR   +  +P+      LG+  ++     +S+  H RR
Sbjct: 118 PPRRRPSRFSAPAASSRLSRLARAPSGRAVFSLGLAATSSPSPSVSRGKHRRR 170


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 47  PPRRNPSSMAPVQLTSRPCTMHGSPTQTP 133
           PP   P S AP+Q  +RP  + G PT  P
Sbjct: 273 PPPPPPPSPAPIQHFARPLHVWGHPTMDP 301


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 4   QTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQ 183
           Q + +S+  + L   TA+   +NG   + + +  +    DP  V +SWDA   N TN   
Sbjct: 6   QLSMLSLLTHALLLLTASSQTINGDDLSALMSFKSLIRNDPRGVLSSWDA-IGNGTNMTA 64

Query: 184 P 186
           P
Sbjct: 65  P 65


>12_02_1046 + 25662715-25662884,25663163-25663757
          Length = 254

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 193 RRLAELRLSHCGKMHPKTRVRSLGRRAMH 107
           RRLAEL LS C    P+ R+R++ R A+H
Sbjct: 56  RRLAELSLSSC---CPRLRLRAVRRLALH 81


>10_08_0974 + 21969713-21971914
          Length = 733

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 121 DPNSVHAS-WDAFFRNATNGAQPGAAYTPPPNLAPY 225
           DP ++ AS W + FR      QP AA  PPP+L+P+
Sbjct: 67  DPVAITASLWVSSFR-----PQPTAAAPPPPSLSPF 97


>10_08_0769 + 20452130-20453314
          Length = 394

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +3

Query: 237 GPAHIPVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATL 416
           G A IP+P SG    +   SPI+  +   + AV+  + +      +A  V+P  +     
Sbjct: 251 GDAMIPLPPSGSTVLLDTFSPISFLVDGAYQAVKKAVTAAVGAPPMATPVEPFDL---CF 307

Query: 417 PELGMRAPSSELI 455
           P+ G    + +L+
Sbjct: 308 PKSGASGAAPDLV 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,530,282
Number of Sequences: 37544
Number of extensions: 484024
Number of successful extensions: 1599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)