Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0215.Seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                 85   4e-17
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             33   0.29 
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_33670| Best HMM Match : DUF710 (HMM E-Value=3.5)                    28   8.1  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   28   8.1  
SB_24419| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/65 (58%), Positives = 44/65 (67%)
 Frame = +1

Query: 22  VNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYT 201
           V   +  +  A EPFL+GSSS YVE MY +WL DP SVH SWDA+FRN + G  PG AY 
Sbjct: 7   VRPQQAAAVVAKEPFLSGSSSNYVEEMYASWLEDPKSVHRSWDAYFRNVSLGKSPGQAYY 66

Query: 202 PPPNL 216
           PPP L
Sbjct: 67  PPPVL 71



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
 Frame = +3

Query: 252 PVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGM 431
           PV  +  MPS    S I   I++DHLAV ++IRSYQ RGH  A +DP          LG 
Sbjct: 74  PVAVATAMPSAVDQSNITA-IVEDHLAVYSMIRSYQIRGHRKAMLDP----------LG- 121

Query: 432 RAPSSELIMRKYFNFDEADMDRVFKLPQLRLSAXXXXXXXXXXF*IVWSKRT-ATNIGIE 608
                           E D+D+VF+LP                  +   ++T   ++G++
Sbjct: 122 ----------------EQDLDKVFRLPNSTFIGGESATALTLRDIVDRLEKTYCHHVGLD 165

Query: 609 FMFINSLEQCNWIRQRMEPP 668
           FMFI    +C+WIR++ E P
Sbjct: 166 FMFIPEKYKCDWIRKKFEMP 185


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 26  MPIG*RAPPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 205
           +P G ++PP  +P   +P+    R     GSP+  P  R   + S  R +  SQ+P    
Sbjct: 256 IPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDFH 315

Query: 206 RP 211
           +P
Sbjct: 316 QP 317


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 163 NATNGAQPGAAYTPPPNLAPYNKNEVPLTSLCHLAAECLRFQQVPL 300
           + +   QPG   TPPP    Y   E+ +TSL  LA      QQ+ L
Sbjct: 38  STSTATQPGLTATPPP--PQYAYQEINVTSLAGLAPHIQVNQQIQL 81


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 249 CERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLD 91
           C + + ++  R+ GR  VCG +  SVC+  E   P  +  V VG   +  G D
Sbjct: 357 CGKRVDMIATRKEGREHVCGEYKCSVCK--EVVPPDHLCYVTVGADALPKGGD 407


>SB_33670| Best HMM Match : DUF710 (HMM E-Value=3.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 526 RRKRKSAPVERNSESFGASVLQQTSVLS 609
           RRK  S P + NSESF   + + T +LS
Sbjct: 34  RRKSISKPFDSNSESFEVRLAESTGLLS 61


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 246 ERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLDVS*TGA 73
           E  ++  V +E  R  +  AW++      EK   R   G  + EPC++   D+  TGA
Sbjct: 161 ESKMVFSVIKEWSREHLVEAWMTDAKAACEKAGVRLPEGCCLQEPCMICSDDL--TGA 216


>SB_24419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 526 RRKRKSAPVERNSESFGASVLQQTSVLS 609
           RRK  S P + NSESF   + + T +LS
Sbjct: 34  RRKSISKPFDSNSESFEVRLAESTGLLS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,540,423
Number of Sequences: 59808
Number of extensions: 509387
Number of successful extensions: 2948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2946
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)