Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0215.Seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    86   3e-17
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF106583-1|AAM15569.1|  183|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   7.2  

>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 53/149 (35%), Positives = 78/149 (52%)
 Frame = +3

Query: 240 PAHIPVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLP 419
           PA   V +S   P+    +  + + I DHL +Q +IRSYQ RGH  AD+DPLGI +A L 
Sbjct: 111 PAAAQVTTSSA-PATRLDTNASVQSISDHLKIQLLIRSYQTRGHNIADLDPLGINSADLD 169

Query: 420 ELGMRAPSSELIMRKYFNFDEADMDRVFKLPQLRLSAXXXXXXXXXXF*IVWSKRTATNI 599
           +     P  EL    ++   E D+DR F LP     +             +      T+ 
Sbjct: 170 D--TIPPELEL---SFYGLGERDLDREFLLPPTTFISEKKSLTLREILQRL-KDIYCTST 223

Query: 600 GIEFMFINSLEQCNWIRQRMEPPNVTKMN 686
           G+E+M +N+LEQ +WIR+R E P VT+++
Sbjct: 224 GVEYMHLNNLEQQDWIRRRFEAPRVTELS 252



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 36/54 (66%), Positives = 40/54 (74%)
 Frame = +1

Query: 58  EPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLA 219
           EPFLNGSSS Y+E MY AWL DP+SVH SWDA+FRN   GA PG A+  PP  A
Sbjct: 49  EPFLNGSSSIYIEQMYEAWLQDPSSVHTSWDAYFRNVEAGAGPGQAFQAPPATA 102


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 670 FGGSMRCRIQ-LHCSREFMNMNSIPMFVAVRLLQTIQNFSQRERFFFFADKRS*GSLNTL 494
           F GS  CR+Q L C+  ++  NS+P+ V ++ L+ I     R   F  +   S   L  L
Sbjct: 504 FDGSSFCRLQILRCANNYLTENSVPVIVNMKHLKIIDLSHNRLNSFDDSALSSLELLEDL 563

Query: 493 SMSAS 479
           ++S++
Sbjct: 564 NLSSN 568


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 88  YVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 210
           Y+ +  + +  DP+S+ A W A F N  +    G  ++  P
Sbjct: 292 YITSQNHGYAVDPDSLPADWKALFTNENDKTNEGIVHSSKP 332


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +1

Query: 37  LKSSTAAEPFLNGSSSAYVETMYNAWLAD-PNS-VHASWDAFFRNATNGAQPGAAYTPPP 210
           L+ ++A+  +   +++  ++ ++   +A+ PN  V+  W+A F+ +T+  QP    TP P
Sbjct: 371 LQGNSASNQWYTSTTNT-MKVVFRPCIANCPNDGVNYRWEADFKPSTDVTQPPVTVTPNP 429

Query: 211 N 213
           N
Sbjct: 430 N 430


>Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical
           protein K03D7.8 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 517 YVYRRKRKSAPVERNSESFGASVLQQTSVLSSCS 618
           ++Y R+RKS P    SE F   +  Q   +S CS
Sbjct: 55  FIYNRRRKSQPSSYRSE-FDTLIFNQMYYVSGCS 87


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 377  RQVTASLVTPDDSLHGEVIVD---YLLVYRGTC*NRRHSAARWHRDVSGTS 234
            R V  + V P + +H   ++    YL        NR+ S +RW R +  T+
Sbjct: 1777 RAVVPAFVAPPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRWERTLGATA 1827


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 377  RQVTASLVTPDDSLHGEVIVD---YLLVYRGTC*NRRHSAARWHRDVSGTS 234
            R V  + V P + +H   ++    YL        NR+ S +RW R +  T+
Sbjct: 1777 RAVVPAFVAPPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRWERTLGATA 1827


>Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical
           protein C26C6.1b protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 377 RQVTASLVTPDDSLHGEVIVD---YLLVYRGTC*NRRHSAARWHRDVSGTS 234
           R V  + V P + +H   ++    YL        NR+ S +RW R +  T+
Sbjct: 407 RAVVPAFVAPPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRWERTLGATA 457


>U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical
           protein C13A10.1 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 425 QFRKRGRRDAERVHIGRQVTASLVT--PDDSLHGE--VIVDYLLVYRGTC*NRRHSAARW 258
           QF +R RRD++ + IG + TAS     P   L  E  V +D     RG+    R +  RW
Sbjct: 11  QFERRHRRDSDTIAIGNRETASKTVRFPSAQLTNEDFVRIDSWRHDRGS--EERENGRRW 68


>AF106583-1|AAM15569.1|  183|Caenorhabditis elegans Hypothetical
           protein F23C8.13 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 214 DWAAACMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSR 92
           D  +  MRR  + RLS C +   +TR    GR  +  T SR
Sbjct: 73  DGESVMMRRRRQARLSMCNEQREQTRHVVSGRATLRMTSSR 113


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 82  SAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGA 192
           ++Y   + N+     PNS H+ +  F R+A+ GAQP A
Sbjct: 635 TSYAANLQNSMQQSAPNSGHSGYATFDRSASLGAQPQA 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,734
Number of Sequences: 27780
Number of extensions: 372963
Number of successful extensions: 1284
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)