Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0215.Seq
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 65 5e-11
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone... 63 1e-10
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi... 35 0.058
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.7
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta... 29 2.2
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 29 2.9
At5g20230.1 68418.m02408 plastocyanin-like domain-containing pro... 29 3.8
At1g11820.1 68414.m01358 glycosyl hydrolase family 17 protein si... 28 5.0
At1g65260.1 68414.m07398 PspA/IM30 family protein contains Pfam ... 28 6.7
At5g41680.2 68418.m05065 protein kinase family protein contains ... 27 8.8
At5g41680.1 68418.m05064 protein kinase family protein contains ... 27 8.8
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 27 8.8
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ... 27 8.8
At3g01180.1 68416.m00023 glycogen synthase, putative similar to ... 27 8.8
At2g24240.1 68415.m02895 potassium channel tetramerisation domai... 27 8.8
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot... 27 8.8
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 64.9 bits (151), Expect = 5e-11
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Frame = +3
Query: 285 SAGSP-INEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMR 461
+A SP I+ + I + + + ++R+YQ GH+ A +DPLG+ +PE +L +
Sbjct: 104 AATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEQREIPE--------DLDLA 155
Query: 462 KYFNFDEADMDRVFKLPQLRLSAXXXXXXXXXXF*IVWSKRTAT---NIGIEFMFINSLE 632
Y F EAD+DR F L ++S + ++ NIG E+M I +
Sbjct: 156 LY-GFTEADLDREFFLGVWQMSGFMSENRPVQTLRSILTRLEQAYCGNIGFEYMHIADRD 214
Query: 633 QCNWIRQRMEPPNVTKMN 686
+CNW+R+++E P + N
Sbjct: 215 KCNWLREKIETPTPWRYN 232
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +1
Query: 46 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 165
S + FL+G+SS Y+E + AW ADPNSV SWD FFRN
Sbjct: 60 SKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRN 99
>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1025
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 270 GMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSE 449
G S S G I+ + I + + + ++R+YQ GH+ A +DPLG+ +PE +
Sbjct: 105 GQASTSPG--ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEKREIPE--------D 154
Query: 450 LIMRKYFNFDEADMDRVFKLPQLRLSAXXXXXXXXXXF*IVWSKRTAT---NIGIEFMFI 620
L Y F EAD+DR F L R+S + S+ IG E+M I
Sbjct: 155 LTPGLY-GFTEADLDREFFLGVWRMSGFLSENRPVQTLRSILSRLEQAYCGTIGYEYMHI 213
Query: 621 NSLEQCNWIRQRMEPPNVTKMN 686
++CNW+R ++E P + N
Sbjct: 214 ADRDKCNWLRDKIETPTPRQYN 235
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +1
Query: 46 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 165
S + FL+G+SS Y+E + AW ADPNSV SWD FFRN
Sbjct: 63 SKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRN 102
>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 918
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 44 APPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRRR 208
APP + +++AP QL+ P + SP QTP + L FS R T H R+
Sbjct: 102 APPPSSVATVAPAQLSQPP---NFSPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQ 153
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 94 ETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTS 252
E AW P +VH + + F+ N P PPP+ P N TS
Sbjct: 841 EAPSQAWKRGPQTVHDASNQSFQQYGNQYTPAGQLPPPPSRYPPASNNPNYTS 893
>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
BTB/POZ domain, INTERPRO:IPR000210
Length = 517
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 388 TRSASRRPRFRNWACVHQVPSSS*GNISISMKPTWTGYSNSLNYVYRRKRKSAPVERNSE 567
+RS R ++ CVHQ PS N++ + + SN L+ YRR+R S P + +
Sbjct: 402 SRSVMDSARSASFHCVHQ-PS----NVNKTQRGDRGSVSN-LSTTYRRRRASPPQAQPQK 455
Query: 568 SFGASVLQ--QTSVLSSCS*IPWNNA 639
S G ++ + + +S +P NA
Sbjct: 456 SIGKRLIMGIKNAFSTSSKQVPKKNA 481
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 237 GPAHIPVPSSGGMPSISAGSP 299
GP+H+PV GMP ++ G P
Sbjct: 506 GPSHVPVQQMPGMPPVNYGLP 526
>At5g20230.1 68418.m02408 plastocyanin-like domain-containing
protein
Length = 196
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 166 ATNGAQPGAAYTPPPNLAPYNKNEVPLTS 252
AT GA PGA TP P P P T+
Sbjct: 128 ATGGATPGAGATPAPGSTPSTGGTTPPTA 156
>At1g11820.1 68414.m01358 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 511
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 76 SSSAYVETMYNAWLADPNSVHASWDAFFRNAT 171
+SS Y+ ++N L P ASW F+ N+T
Sbjct: 327 TSSVYIYELFNEDLRAPPVSEASWGLFYGNST 358
>At1g65260.1 68414.m07398 PspA/IM30 family protein contains Pfam
PF04012: PspA/IM30 family profile; similar to
Membrane-associated 30 kDa protein, chloroplast
precursor (M30) (Swiss-Prot:Q03943) [Pisum sativum];
similar to phage shock protein A (GI:28806161) [Vibrio
parahaemolyticus]; similar to Phage shock protein A.
(Swiss-Prot:P23853) [Shigella flexneri]
Length = 330
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 47 PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRRR 208
PP R +S +P ++RPC++ P +T + G A+R L A R R
Sbjct: 13 PPLRPTASSSPSTSSNRPCSLRILPLRTSF--FGNSSGALRVNVLRLACDNRLR 64
>At5g41680.2 68418.m05065 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; similar to
receptor-like protein kinase (GI:4008006) [Arabidopsis
thaliana]; similar to receptor-like kinase RHG1
(GI:21239380) (GI:21239382) [Glycine max]
Length = 333
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 199 CMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSRRKLNWS 74
C + +L L+H K P+T +RS G A T +R+ +S
Sbjct: 194 CYGCICDLGLTHITKSLPQTTLRSSGYHAPEITDTRKSTQFS 235
>At5g41680.1 68418.m05064 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; similar to
receptor-like protein kinase (GI:4008006) [Arabidopsis
thaliana]; similar to receptor-like kinase RHG1
(GI:21239380) (GI:21239382) [Glycine max]
Length = 359
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 199 CMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSRRKLNWS 74
C + +L L+H K P+T +RS G A T +R+ +S
Sbjct: 220 CYGCICDLGLTHITKSLPQTTLRSSGYHAPEITDTRKSTQFS 261
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 151 AFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLCHLAAE 273
A R ++N +P A + P + Y K+++P LC+ E
Sbjct: 131 AVTRPSSNPTEPEAVWNCPKCRSSYQKSKIPRRYLCYCGKE 171
>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
weak similarity to PhnP protein. (Swiss-Prot:P16692)
[Escherichia coli]
Length = 290
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Frame = +3
Query: 282 ISAGSPINEKIIDDHLAVQAI-----IRSYQARGHLAADVDPLGI--TTATLPELGMRAP 440
I G E+II H A+ IRS Q RG D DPL + + T+ + R P
Sbjct: 79 IDVGKSFREQIILTHEHADAVHGLDEIRSLQPRGATIVDTDPLPVFLSQFTMESIATRFP 138
>At3g01180.1 68416.m00023 glycogen synthase, putative similar to
glycogen synthase Q43847 from [Solanum tuberosum]
Length = 792
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 47 PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHT 199
PP + S M + TS P T G P++ +R G +S + L++AP T
Sbjct: 215 PPYKPSSVMTSPEKTSDPVTSPGKPSK---SRAGAFWSDPLPSYLTKAPQT 262
>At2g24240.1 68415.m02895 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 441
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 283 IEGIPPLDGTGM*AGPH-SCCMA 218
++GI P DGT + AGP CC+A
Sbjct: 115 VKGIAPGDGTAIRAGPDGGCCVA 137
>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 555
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -3
Query: 401 DAERVHIGRQVTASLVTPDDSLHGE 327
+AER ++G+Q+ AS+++P+ SL E
Sbjct: 506 NAERRYLGQQLYASVLSPEKSLRDE 530
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,200
Number of Sequences: 28952
Number of extensions: 347676
Number of successful extensions: 1043
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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