Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0212.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +2

Query: 545 PSNPRASATDPN----YLSGSTRRCTRTLHTRSRRHQQGSSDHDPEE 673
           P+ P A     N      +G+T   TR L  R +   +G+ D D +E
Sbjct: 238 PATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDE 284


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 578 NYLSGSTRRCTRTLHTRSRRHQQGSSDHDPEEPHLGPDPPVRYWSR 715
           +Y +   R C+R      ++ ++    H+ EE HL      R +SR
Sbjct: 244 SYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYSR 289


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 707 STVLAGQVQDAVLQGRG 657
           S+V +GQ Q +VLQG G
Sbjct: 820 SSVQSGQQQQSVLQGLG 836


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 509 LVTGNLCRHTAHPSNPR 559
           LV   +C  TAH ++PR
Sbjct: 158 LVVAEVCYFTAHVTHPR 174


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = +1

Query: 475 DQVEERIHSRVPRDRKSMSTYCTPLKPSRLGNGPKLFVREHPKVYSNVAHTLA 633
           D V  R+ S  P   +     C+P +  ++        R +PK +S +    A
Sbjct: 62  DPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQYA 114


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = +1

Query: 475 DQVEERIHSRVPRDRKSMSTYCTPLKPSRLGNGPKLFVREHPKVYSNVAHTLA 633
           D V  R+ S  P   +     C+P +  ++        R +PK +S +    A
Sbjct: 62  DPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQYA 114


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 90  ICSDKTGTLTTNQMSVSRMFIFEKIEGGDSSFLEFEITGSTYEPI 224
           ICS   G +    + +S +  F+K +GG    +   I+   + P+
Sbjct: 102 ICSALFGKIKPTAIGLSLIKGFDKKQGGGIELISHIISKQLHIPV 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,390
Number of Sequences: 438
Number of extensions: 4141
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)